Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29185 and AZOBR_RS29190 are separated by 86 nucleotides AZOBR_RS29190 and AZOBR_RS29195 are separated by 63 nucleotides
AZOBR_RS29185: AZOBR_RS29185 - aldehyde dehydrogenase, at 673,724 to 675,160
_RS29185
AZOBR_RS29190: AZOBR_RS29190 - hydroxyacid dehydrogenase, at 675,247 to 676,149
_RS29190
AZOBR_RS29195: AZOBR_RS29195 - ABC transporter permease, at 676,213 to 677,421
_RS29195
Position (kb) 675
676
677 Strain fitness (log2 ratio) -1
0
1 at 674.789 kb on + strand, within AZOBR_RS29185 at 674.789 kb on + strand, within AZOBR_RS29185 at 674.790 kb on - strand, within AZOBR_RS29185 at 675.038 kb on + strand at 675.038 kb on + strand at 675.038 kb on + strand at 675.135 kb on - strand at 675.212 kb on + strand at 675.212 kb on + strand at 675.213 kb on - strand at 675.213 kb on - strand at 675.776 kb on - strand, within AZOBR_RS29190 at 675.776 kb on - strand, within AZOBR_RS29190 at 676.069 kb on + strand at 676.070 kb on - strand at 676.103 kb on - strand at 676.331 kb on - strand at 676.331 kb on - strand at 676.654 kb on + strand, within AZOBR_RS29195 at 676.655 kb on - strand, within AZOBR_RS29195 at 676.729 kb on + strand, within AZOBR_RS29195 at 676.730 kb on - strand, within AZOBR_RS29195 at 676.840 kb on + strand, within AZOBR_RS29195 at 676.840 kb on + strand, within AZOBR_RS29195 at 676.841 kb on - strand, within AZOBR_RS29195 at 677.137 kb on + strand, within AZOBR_RS29195 at 677.138 kb on - strand, within AZOBR_RS29195
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 674,789 + AZOBR_RS29185 0.74 -0.0 674,789 + AZOBR_RS29185 0.74 +0.5 674,790 - AZOBR_RS29185 0.74 -0.1 675,038 + -0.0 675,038 + -0.1 675,038 + +1.1 675,135 - +0.1 675,212 + -0.1 675,212 + +0.1 675,213 - +0.8 675,213 - +0.9 675,776 - AZOBR_RS29190 0.59 +0.7 675,776 - AZOBR_RS29190 0.59 +0.3 676,069 + -0.2 676,070 - -0.0 676,103 - +0.2 676,331 - +0.3 676,331 - -0.4 676,654 + AZOBR_RS29195 0.36 -0.2 676,655 - AZOBR_RS29195 0.37 -0.9 676,729 + AZOBR_RS29195 0.43 -0.1 676,730 - AZOBR_RS29195 0.43 -0.0 676,840 + AZOBR_RS29195 0.52 +1.5 676,840 + AZOBR_RS29195 0.52 +1.1 676,841 - AZOBR_RS29195 0.52 -0.9 677,137 + AZOBR_RS29195 0.76 +0.1 677,138 - AZOBR_RS29195 0.77 -0.9
Or see this region's nucleotide sequence