Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26935 and AZOBR_RS26940 overlap by 4 nucleotides AZOBR_RS26940 and AZOBR_RS26945 overlap by 14 nucleotides AZOBR_RS26945 and AZOBR_RS26950 are separated by 421 nucleotides
AZOBR_RS26935: AZOBR_RS26935 - branched-chain amino acid ABC transporter permease, at 190,104 to 191,093
_RS26935
AZOBR_RS26940: AZOBR_RS26940 - hemolysin III, at 191,090 to 191,848
_RS26940
AZOBR_RS26945: AZOBR_RS26945 - branched-chain amino acid ABC transporter, at 191,835 to 192,545
_RS26945
AZOBR_RS26950: AZOBR_RS26950 - membrane protein, at 192,967 to 193,626
_RS26950
Position (kb) 191
192
193 Strain fitness (log2 ratio) -1
0
1 at 191.538 kb on - strand, within AZOBR_RS26940 at 191.538 kb on - strand, within AZOBR_RS26940 at 191.817 kb on - strand at 191.817 kb on - strand at 191.884 kb on - strand at 192.090 kb on + strand, within AZOBR_RS26945 at 192.091 kb on - strand, within AZOBR_RS26945 at 192.189 kb on + strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.190 kb on - strand, within AZOBR_RS26945 at 192.746 kb on + strand at 192.747 kb on - strand at 193.088 kb on + strand, within AZOBR_RS26950 at 193.194 kb on - strand, within AZOBR_RS26950 at 193.250 kb on + strand, within AZOBR_RS26950 at 193.268 kb on + strand, within AZOBR_RS26950 at 193.269 kb on - strand, within AZOBR_RS26950
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 191,538 - AZOBR_RS26940 0.59 -0.3 191,538 - AZOBR_RS26940 0.59 -1.4 191,817 - +1.3 191,817 - -1.0 191,884 - +0.8 192,090 + AZOBR_RS26945 0.36 -1.3 192,091 - AZOBR_RS26945 0.36 -0.1 192,189 + AZOBR_RS26945 0.50 -0.7 192,190 - AZOBR_RS26945 0.50 -0.9 192,190 - AZOBR_RS26945 0.50 +0.7 192,190 - AZOBR_RS26945 0.50 -0.8 192,746 + +0.0 192,747 - -0.1 193,088 + AZOBR_RS26950 0.18 -0.4 193,194 - AZOBR_RS26950 0.34 +1.0 193,250 + AZOBR_RS26950 0.43 -0.2 193,268 + AZOBR_RS26950 0.46 -1.4 193,269 - AZOBR_RS26950 0.46 -0.0
Or see this region's nucleotide sequence