Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23865 and AZOBR_RS23870 are separated by 249 nucleotides AZOBR_RS23870 and AZOBR_RS23875 are separated by 105 nucleotides AZOBR_RS23875 and AZOBR_RS23880 are separated by 276 nucleotides
AZOBR_RS23865: AZOBR_RS23865 - hypothetical protein, at 385,598 to 386,206
_RS23865
AZOBR_RS23870: AZOBR_RS23870 - hypothetical protein, at 386,456 to 386,650
_RS23870
AZOBR_RS23875: AZOBR_RS23875 - hypothetical protein, at 386,756 to 388,597
_RS23875
AZOBR_RS23880: AZOBR_RS23880 - hydrolase, at 388,874 to 389,503
_RS23880
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.776 kb on + strand, within AZOBR_RS23865 at 385.777 kb on - strand, within AZOBR_RS23865 at 385.777 kb on - strand, within AZOBR_RS23865 at 385.956 kb on + strand, within AZOBR_RS23865 at 385.957 kb on - strand, within AZOBR_RS23865 at 385.957 kb on - strand, within AZOBR_RS23865 at 386.223 kb on + strand at 386.223 kb on + strand at 386.272 kb on + strand at 386.272 kb on + strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.562 kb on - strand, within AZOBR_RS23870 at 386.564 kb on - strand, within AZOBR_RS23870 at 386.953 kb on - strand, within AZOBR_RS23875 at 387.099 kb on + strand, within AZOBR_RS23875 at 387.100 kb on - strand, within AZOBR_RS23875 at 387.100 kb on - strand, within AZOBR_RS23875 at 387.196 kb on + strand, within AZOBR_RS23875 at 387.196 kb on + strand, within AZOBR_RS23875 at 387.330 kb on + strand, within AZOBR_RS23875 at 387.330 kb on + strand, within AZOBR_RS23875 at 387.331 kb on - strand, within AZOBR_RS23875 at 387.513 kb on + strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.514 kb on - strand, within AZOBR_RS23875 at 387.759 kb on + strand, within AZOBR_RS23875 at 387.760 kb on - strand, within AZOBR_RS23875 at 387.859 kb on - strand, within AZOBR_RS23875 at 388.033 kb on + strand, within AZOBR_RS23875 at 388.344 kb on - strand, within AZOBR_RS23875 at 388.365 kb on + strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.467 kb on + strand at 388.685 kb on + strand at 388.686 kb on - strand at 388.686 kb on - strand at 388.784 kb on + strand at 388.784 kb on + strand at 388.785 kb on - strand at 388.785 kb on - strand at 388.790 kb on + strand at 388.791 kb on - strand at 388.791 kb on - strand at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.582 kb on + strand at 389.582 kb on + strand at 389.583 kb on - strand at 389.583 kb on - strand at 389.585 kb on + strand at 389.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 385,776 + AZOBR_RS23865 0.29 +0.9 385,776 + AZOBR_RS23865 0.29 +0.5 385,776 + AZOBR_RS23865 0.29 +0.1 385,776 + AZOBR_RS23865 0.29 -0.1 385,776 + AZOBR_RS23865 0.29 -0.0 385,777 - AZOBR_RS23865 0.29 +0.3 385,777 - AZOBR_RS23865 0.29 +0.4 385,956 + AZOBR_RS23865 0.59 -0.8 385,957 - AZOBR_RS23865 0.59 -0.1 385,957 - AZOBR_RS23865 0.59 +0.4 386,223 + -0.1 386,223 + -0.2 386,272 + -0.4 386,272 + +0.8 386,273 - +0.4 386,273 - -0.1 386,273 - +0.1 386,273 - -0.3 386,562 - AZOBR_RS23870 0.54 -0.0 386,564 - AZOBR_RS23870 0.55 -0.7 386,953 - AZOBR_RS23875 0.11 +0.1 387,099 + AZOBR_RS23875 0.19 -0.0 387,100 - AZOBR_RS23875 0.19 -0.1 387,100 - AZOBR_RS23875 0.19 +0.0 387,196 + AZOBR_RS23875 0.24 -0.6 387,196 + AZOBR_RS23875 0.24 +0.0 387,330 + AZOBR_RS23875 0.31 +0.0 387,330 + AZOBR_RS23875 0.31 -0.6 387,331 - AZOBR_RS23875 0.31 -0.2 387,513 + AZOBR_RS23875 0.41 -0.1 387,514 - AZOBR_RS23875 0.41 -1.2 387,514 - AZOBR_RS23875 0.41 -1.7 387,514 - AZOBR_RS23875 0.41 -0.5 387,759 + AZOBR_RS23875 0.54 -0.0 387,760 - AZOBR_RS23875 0.55 +0.4 387,859 - AZOBR_RS23875 0.60 -0.6 388,033 + AZOBR_RS23875 0.69 -0.6 388,344 - AZOBR_RS23875 0.86 -0.3 388,365 + AZOBR_RS23875 0.87 -0.2 388,366 - AZOBR_RS23875 0.87 -0.3 388,366 - AZOBR_RS23875 0.87 -0.1 388,366 - AZOBR_RS23875 0.87 +0.0 388,366 - AZOBR_RS23875 0.87 +0.2 388,366 - AZOBR_RS23875 0.87 -1.1 388,366 - AZOBR_RS23875 0.87 -0.1 388,467 + +0.1 388,685 + -0.1 388,686 - +0.2 388,686 - -0.0 388,784 + +0.2 388,784 + +0.1 388,785 - +0.2 388,785 - +0.0 388,790 + -0.1 388,791 - +0.9 388,791 - +0.2 389,193 + AZOBR_RS23880 0.51 -2.5 389,193 + AZOBR_RS23880 0.51 +0.4 389,193 + AZOBR_RS23880 0.51 -0.4 389,194 - AZOBR_RS23880 0.51 -0.4 389,194 - AZOBR_RS23880 0.51 -0.4 389,582 + +0.2 389,582 + +0.6 389,583 - +0.3 389,583 - +0.9 389,585 + +0.8 389,586 - +0.4
Or see this region's nucleotide sequence