Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22755

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22750 and AZOBR_RS22755 are separated by 46 nucleotidesAZOBR_RS22755 and AZOBR_RS22760 are separated by 87 nucleotidesAZOBR_RS22760 and AZOBR_RS22765 are separated by 17 nucleotides AZOBR_RS22750: AZOBR_RS22750 - glutamyl-tRNA(Gln) amidotransferase, at 113,870 to 115,282 _RS22750 AZOBR_RS22755: AZOBR_RS22755 - dihydropyrimidinase, at 115,329 to 116,765 _RS22755 AZOBR_RS22760: AZOBR_RS22760 - Asp/Glu/hydantoin racemase, at 116,853 to 117,584 _RS22760 AZOBR_RS22765: AZOBR_RS22765 - hydrolase, at 117,602 to 118,933 _RS22765 Position (kb) 115 116 117Strain fitness (log2 ratio) -2 -1 0 1at 114.840 kb on + strand, within AZOBR_RS22750at 114.841 kb on - strand, within AZOBR_RS22750at 114.841 kb on - strand, within AZOBR_RS22750at 115.002 kb on + strand, within AZOBR_RS22750at 115.002 kb on + strand, within AZOBR_RS22750at 115.002 kb on + strand, within AZOBR_RS22750at 115.003 kb on - strand, within AZOBR_RS22750at 115.331 kb on - strandat 115.427 kb on + strandat 115.498 kb on + strand, within AZOBR_RS22755at 115.498 kb on + strand, within AZOBR_RS22755at 115.499 kb on - strand, within AZOBR_RS22755at 115.499 kb on - strand, within AZOBR_RS22755at 115.499 kb on - strand, within AZOBR_RS22755at 115.508 kb on - strand, within AZOBR_RS22755at 115.625 kb on - strand, within AZOBR_RS22755at 115.963 kb on + strand, within AZOBR_RS22755at 115.963 kb on + strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 115.964 kb on - strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.305 kb on + strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.306 kb on - strand, within AZOBR_RS22755at 116.323 kb on + strand, within AZOBR_RS22755at 116.437 kb on + strand, within AZOBR_RS22755at 116.437 kb on + strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.438 kb on - strand, within AZOBR_RS22755at 116.845 kb on + strandat 116.845 kb on + strandat 117.163 kb on + strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.164 kb on - strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.199 kb on + strand, within AZOBR_RS22760at 117.200 kb on - strand, within AZOBR_RS22760at 117.458 kb on - strand, within AZOBR_RS22760at 117.584 kb on + strandat 117.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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114,840 + AZOBR_RS22750 0.69 -0.2
114,841 - AZOBR_RS22750 0.69 -0.5
114,841 - AZOBR_RS22750 0.69 -0.2
115,002 + AZOBR_RS22750 0.80 +0.1
115,002 + AZOBR_RS22750 0.80 -0.4
115,002 + AZOBR_RS22750 0.80 -0.5
115,003 - AZOBR_RS22750 0.80 +0.1
115,331 - +0.3
115,427 + +0.3
115,498 + AZOBR_RS22755 0.12 +1.0
115,498 + AZOBR_RS22755 0.12 +0.1
115,499 - AZOBR_RS22755 0.12 -0.6
115,499 - AZOBR_RS22755 0.12 -0.5
115,499 - AZOBR_RS22755 0.12 -0.3
115,508 - AZOBR_RS22755 0.12 +0.1
115,625 - AZOBR_RS22755 0.21 -0.0
115,963 + AZOBR_RS22755 0.44 -0.6
115,963 + AZOBR_RS22755 0.44 -0.3
115,964 - AZOBR_RS22755 0.44 -2.7
115,964 - AZOBR_RS22755 0.44 -1.0
115,964 - AZOBR_RS22755 0.44 +0.0
116,305 + AZOBR_RS22755 0.68 -0.1
116,305 + AZOBR_RS22755 0.68 -0.0
116,305 + AZOBR_RS22755 0.68 -0.2
116,305 + AZOBR_RS22755 0.68 +0.2
116,305 + AZOBR_RS22755 0.68 +1.4
116,306 - AZOBR_RS22755 0.68 -0.5
116,306 - AZOBR_RS22755 0.68 -0.1
116,306 - AZOBR_RS22755 0.68 +0.1
116,306 - AZOBR_RS22755 0.68 +0.9
116,323 + AZOBR_RS22755 0.69 -0.0
116,437 + AZOBR_RS22755 0.77 -0.0
116,437 + AZOBR_RS22755 0.77 -0.0
116,438 - AZOBR_RS22755 0.77 +0.0
116,438 - AZOBR_RS22755 0.77 +0.3
116,438 - AZOBR_RS22755 0.77 -0.9
116,845 + -0.5
116,845 + +0.3
117,163 + AZOBR_RS22760 0.42 -0.6
117,164 - AZOBR_RS22760 0.42 -1.8
117,164 - AZOBR_RS22760 0.42 -0.5
117,199 + AZOBR_RS22760 0.47 +0.1
117,199 + AZOBR_RS22760 0.47 +0.5
117,200 - AZOBR_RS22760 0.47 -1.4
117,458 - AZOBR_RS22760 0.83 +0.1
117,584 + +1.0
117,585 - +0.2

Or see this region's nucleotide sequence