Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16510

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16505 and AZOBR_RS16510 are separated by 135 nucleotidesAZOBR_RS16510 and AZOBR_RS16515 are separated by 7 nucleotides AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647 _RS16505 AZOBR_RS16510: AZOBR_RS16510 - S-formylglutathione hydrolase, at 454,783 to 455,646 _RS16510 AZOBR_RS16515: AZOBR_RS16515 - S-(hydroxymethyl)glutathione dehydrogenase, at 455,654 to 456,772 _RS16515 Position (kb) 454 455 456Strain fitness (log2 ratio) -1 0 1at 453.803 kb on + strand, within AZOBR_RS16505at 453.824 kb on + strand, within AZOBR_RS16505at 453.824 kb on + strand, within AZOBR_RS16505at 453.825 kb on - strand, within AZOBR_RS16505at 453.905 kb on + strand, within AZOBR_RS16505at 453.905 kb on + strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 453.906 kb on - strand, within AZOBR_RS16505at 454.055 kb on + strand, within AZOBR_RS16505at 454.055 kb on + strand, within AZOBR_RS16505at 454.056 kb on - strand, within AZOBR_RS16505at 454.109 kb on + strand, within AZOBR_RS16505at 454.109 kb on + strand, within AZOBR_RS16505at 454.514 kb on + strand, within AZOBR_RS16505at 454.514 kb on + strand, within AZOBR_RS16505at 454.515 kb on - strand, within AZOBR_RS16505at 454.515 kb on - strand, within AZOBR_RS16505at 454.735 kb on + strandat 454.736 kb on - strandat 454.736 kb on - strandat 454.764 kb on + strandat 454.765 kb on - strandat 454.850 kb on + strandat 454.850 kb on + strandat 454.851 kb on - strandat 455.043 kb on - strand, within AZOBR_RS16510at 455.258 kb on + strand, within AZOBR_RS16510at 455.258 kb on + strand, within AZOBR_RS16510at 455.258 kb on + strand, within AZOBR_RS16510at 455.258 kb on + strand, within AZOBR_RS16510at 455.258 kb on + strand, within AZOBR_RS16510at 455.259 kb on - strand, within AZOBR_RS16510at 455.259 kb on - strand, within AZOBR_RS16510at 455.259 kb on - strand, within AZOBR_RS16510at 455.483 kb on + strand, within AZOBR_RS16510at 455.537 kb on + strand, within AZOBR_RS16510at 455.537 kb on + strand, within AZOBR_RS16510at 455.538 kb on - strand, within AZOBR_RS16510at 455.538 kb on - strand, within AZOBR_RS16510at 455.664 kb on + strandat 455.665 kb on - strandat 455.793 kb on + strand, within AZOBR_RS16515at 455.794 kb on - strand, within AZOBR_RS16515at 455.995 kb on - strand, within AZOBR_RS16515at 456.048 kb on + strand, within AZOBR_RS16515at 456.048 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.636 kb on + strand, within AZOBR_RS16515at 456.636 kb on + strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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453,803 + AZOBR_RS16505 0.14 -0.1
453,824 + AZOBR_RS16505 0.17 -0.6
453,824 + AZOBR_RS16505 0.17 +0.3
453,825 - AZOBR_RS16505 0.17 +0.1
453,905 + AZOBR_RS16505 0.25 +0.8
453,905 + AZOBR_RS16505 0.25 -0.2
453,906 - AZOBR_RS16505 0.25 +0.4
453,906 - AZOBR_RS16505 0.25 +0.5
453,906 - AZOBR_RS16505 0.25 -0.2
454,055 + AZOBR_RS16505 0.40 -0.4
454,055 + AZOBR_RS16505 0.40 -0.3
454,056 - AZOBR_RS16505 0.40 +0.1
454,109 + AZOBR_RS16505 0.45 -0.1
454,109 + AZOBR_RS16505 0.45 -0.1
454,514 + AZOBR_RS16505 0.86 -0.4
454,514 + AZOBR_RS16505 0.86 -0.4
454,515 - AZOBR_RS16505 0.87 -0.9
454,515 - AZOBR_RS16505 0.87 +0.7
454,735 + +0.3
454,736 - +0.1
454,736 - +0.1
454,764 + -0.8
454,765 - +0.8
454,850 + -0.9
454,850 + -0.1
454,851 - +0.6
455,043 - AZOBR_RS16510 0.30 +0.9
455,258 + AZOBR_RS16510 0.55 -1.3
455,258 + AZOBR_RS16510 0.55 +0.3
455,258 + AZOBR_RS16510 0.55 +0.1
455,258 + AZOBR_RS16510 0.55 +0.1
455,258 + AZOBR_RS16510 0.55 -1.3
455,259 - AZOBR_RS16510 0.55 -0.1
455,259 - AZOBR_RS16510 0.55 +0.0
455,259 - AZOBR_RS16510 0.55 +0.5
455,483 + AZOBR_RS16510 0.81 +0.6
455,537 + AZOBR_RS16510 0.87 +1.1
455,537 + AZOBR_RS16510 0.87 -0.8
455,538 - AZOBR_RS16510 0.87 +0.5
455,538 - AZOBR_RS16510 0.87 -0.0
455,664 + +0.9
455,665 - -0.0
455,793 + AZOBR_RS16515 0.12 +0.1
455,794 - AZOBR_RS16515 0.13 -0.5
455,995 - AZOBR_RS16515 0.30 +1.5
456,048 + AZOBR_RS16515 0.35 -0.2
456,048 + AZOBR_RS16515 0.35 -0.5
456,366 + AZOBR_RS16515 0.64 +0.6
456,366 + AZOBR_RS16515 0.64 -0.1
456,366 + AZOBR_RS16515 0.64 -1.0
456,366 + AZOBR_RS16515 0.64 -1.2
456,366 + AZOBR_RS16515 0.64 +0.1
456,367 - AZOBR_RS16515 0.64 +0.8
456,367 - AZOBR_RS16515 0.64 -0.3
456,367 - AZOBR_RS16515 0.64 +0.6
456,367 - AZOBR_RS16515 0.64 +0.4
456,367 - AZOBR_RS16515 0.64 +0.0
456,367 - AZOBR_RS16515 0.64 +0.7
456,636 + AZOBR_RS16515 0.88 -0.2
456,636 + AZOBR_RS16515 0.88 -1.0
456,637 - AZOBR_RS16515 0.88 -0.5
456,637 - AZOBR_RS16515 0.88 +0.0
456,637 - AZOBR_RS16515 0.88 +0.0
456,637 - AZOBR_RS16515 0.88 +0.5

Or see this region's nucleotide sequence