Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06570

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06560 and AZOBR_RS06565 are separated by 50 nucleotidesAZOBR_RS06565 and AZOBR_RS06570 are separated by 175 nucleotidesAZOBR_RS06570 and AZOBR_RS06575 are separated by 176 nucleotides AZOBR_RS06560: AZOBR_RS06560 - acetolactate synthase, at 1,389,133 to 1,390,896 _RS06560 AZOBR_RS06565: AZOBR_RS06565 - acetolactate synthase, at 1,390,947 to 1,391,453 _RS06565 AZOBR_RS06570: AZOBR_RS06570 - ketol-acid reductoisomerase, at 1,391,629 to 1,392,648 _RS06570 AZOBR_RS06575: AZOBR_RS06575 - PhoU family transcriptional regulator, at 1,392,825 to 1,393,529 _RS06575 Position (kb) 1391 1392 1393Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1390.939 kb on + strandat 1390.940 kb on - strandat 1390.940 kb on - strandat 1391.044 kb on - strand, within AZOBR_RS06565at 1391.475 kb on + strandat 1393.033 kb on + strand, within AZOBR_RS06575at 1393.033 kb on + strand, within AZOBR_RS06575at 1393.033 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.099 kb on + strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.100 kb on - strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.345 kb on + strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575at 1393.346 kb on - strand, within AZOBR_RS06575

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,390,939 + +0.3
1,390,940 - -3.2
1,390,940 - -6.5
1,391,044 - AZOBR_RS06565 0.19 -4.9
1,391,475 + -0.5
1,393,033 + AZOBR_RS06575 0.30 +0.0
1,393,033 + AZOBR_RS06575 0.30 -0.1
1,393,033 + AZOBR_RS06575 0.30 -0.1
1,393,099 + AZOBR_RS06575 0.39 -2.1
1,393,099 + AZOBR_RS06575 0.39 -0.2
1,393,099 + AZOBR_RS06575 0.39 -0.5
1,393,099 + AZOBR_RS06575 0.39 -0.5
1,393,100 - AZOBR_RS06575 0.39 +0.6
1,393,100 - AZOBR_RS06575 0.39 -0.3
1,393,100 - AZOBR_RS06575 0.39 +0.2
1,393,345 + AZOBR_RS06575 0.74 -0.1
1,393,345 + AZOBR_RS06575 0.74 -1.1
1,393,345 + AZOBR_RS06575 0.74 -0.8
1,393,345 + AZOBR_RS06575 0.74 +1.1
1,393,345 + AZOBR_RS06575 0.74 -0.5
1,393,346 - AZOBR_RS06575 0.74 -0.8
1,393,346 - AZOBR_RS06575 0.74 +0.0
1,393,346 - AZOBR_RS06575 0.74 +0.5

Or see this region's nucleotide sequence