Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00185 and AZOBR_RS00190 are separated by 219 nucleotides AZOBR_RS00190 and AZOBR_RS00195 are separated by 21 nucleotides
AZOBR_RS00185: AZOBR_RS00185 - transcriptional regulator, at 24,267 to 25,934
_RS00185
AZOBR_RS00190: AZOBR_RS00190 - L-glutamate dehydrogenase (NAD+) (EC 1.4.1.2) <small>(from data)</small>, at 26,154 to 31,010
_RS00190
AZOBR_RS00195: AZOBR_RS00195 - hypothetical protein, at 31,032 to 31,520
_RS00195
Position (kb) 26
27
28
29
30
31
32 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 25.541 kb on - strand, within AZOBR_RS00185 at 26.038 kb on + strand at 26.042 kb on - strand at 26.107 kb on + strand at 26.107 kb on + strand at 26.107 kb on + strand at 26.108 kb on - strand at 26.108 kb on - strand at 26.323 kb on - strand at 26.583 kb on + strand at 27.003 kb on + strand, within AZOBR_RS00190 at 27.003 kb on + strand, within AZOBR_RS00190 at 27.004 kb on - strand, within AZOBR_RS00190 at 27.004 kb on - strand, within AZOBR_RS00190 at 27.192 kb on + strand, within AZOBR_RS00190 at 27.193 kb on - strand, within AZOBR_RS00190 at 27.219 kb on + strand, within AZOBR_RS00190 at 27.312 kb on + strand, within AZOBR_RS00190 at 27.313 kb on - strand, within AZOBR_RS00190 at 27.453 kb on + strand, within AZOBR_RS00190 at 27.454 kb on - strand, within AZOBR_RS00190 at 27.520 kb on - strand, within AZOBR_RS00190 at 27.762 kb on + strand, within AZOBR_RS00190 at 27.897 kb on + strand, within AZOBR_RS00190 at 27.898 kb on - strand, within AZOBR_RS00190 at 28.207 kb on - strand, within AZOBR_RS00190 at 28.207 kb on - strand, within AZOBR_RS00190 at 28.207 kb on - strand, within AZOBR_RS00190 at 28.488 kb on + strand, within AZOBR_RS00190 at 28.488 kb on + strand, within AZOBR_RS00190 at 28.797 kb on + strand, within AZOBR_RS00190 at 28.797 kb on + strand, within AZOBR_RS00190 at 28.798 kb on - strand, within AZOBR_RS00190 at 28.798 kb on - strand, within AZOBR_RS00190 at 28.902 kb on + strand, within AZOBR_RS00190 at 29.304 kb on + strand, within AZOBR_RS00190 at 29.487 kb on + strand, within AZOBR_RS00190 at 29.488 kb on - strand, within AZOBR_RS00190 at 29.488 kb on - strand, within AZOBR_RS00190 at 29.488 kb on - strand, within AZOBR_RS00190 at 29.823 kb on + strand, within AZOBR_RS00190 at 29.823 kb on + strand, within AZOBR_RS00190 at 29.823 kb on + strand, within AZOBR_RS00190 at 29.824 kb on - strand, within AZOBR_RS00190 at 29.824 kb on - strand, within AZOBR_RS00190 at 29.824 kb on - strand, within AZOBR_RS00190 at 29.824 kb on - strand, within AZOBR_RS00190 at 29.940 kb on + strand, within AZOBR_RS00190 at 29.941 kb on - strand, within AZOBR_RS00190 at 30.024 kb on + strand, within AZOBR_RS00190 at 30.042 kb on + strand, within AZOBR_RS00190 at 30.042 kb on + strand, within AZOBR_RS00190 at 30.106 kb on - strand, within AZOBR_RS00190 at 30.280 kb on - strand, within AZOBR_RS00190 at 30.687 kb on + strand at 30.687 kb on + strand at 30.687 kb on + strand at 30.688 kb on - strand at 30.688 kb on - strand at 31.055 kb on - strand at 31.055 kb on - strand at 31.511 kb on - strand at 31.620 kb on + strand at 31.621 kb on - strand at 31.647 kb on - strand at 31.748 kb on + strand at 31.748 kb on + strand at 31.748 kb on + strand at 31.748 kb on + strand at 31.748 kb on + strand at 31.749 kb on - strand at 31.749 kb on - strand at 31.749 kb on - strand at 31.749 kb on - strand at 31.749 kb on - strand at 31.749 kb on - strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.751 kb on + strand at 31.752 kb on - strand at 31.752 kb on - strand at 31.752 kb on - strand at 31.752 kb on - strand at 31.779 kb on - strand at 31.831 kb on + strand at 31.894 kb on + strand at 31.894 kb on + strand at 31.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 25,541 - AZOBR_RS00185 0.76 +0.3 26,038 + -1.2 26,042 - +0.2 26,107 + -0.4 26,107 + +0.1 26,107 + +0.5 26,108 - -1.3 26,108 - -3.8 26,323 - -4.0 26,583 + +0.3 27,003 + AZOBR_RS00190 0.17 -0.3 27,003 + AZOBR_RS00190 0.17 -2.6 27,004 - AZOBR_RS00190 0.18 -4.2 27,004 - AZOBR_RS00190 0.18 -1.8 27,192 + AZOBR_RS00190 0.21 -3.0 27,193 - AZOBR_RS00190 0.21 -4.4 27,219 + AZOBR_RS00190 0.22 -3.7 27,312 + AZOBR_RS00190 0.24 -4.5 27,313 - AZOBR_RS00190 0.24 -4.3 27,453 + AZOBR_RS00190 0.27 -4.3 27,454 - AZOBR_RS00190 0.27 -3.6 27,520 - AZOBR_RS00190 0.28 -2.0 27,762 + AZOBR_RS00190 0.33 -3.8 27,897 + AZOBR_RS00190 0.36 -4.6 27,898 - AZOBR_RS00190 0.36 -2.4 28,207 - AZOBR_RS00190 0.42 -2.4 28,207 - AZOBR_RS00190 0.42 -3.7 28,207 - AZOBR_RS00190 0.42 -3.1 28,488 + AZOBR_RS00190 0.48 -1.5 28,488 + AZOBR_RS00190 0.48 -1.9 28,797 + AZOBR_RS00190 0.54 -1.7 28,797 + AZOBR_RS00190 0.54 -3.2 28,798 - AZOBR_RS00190 0.54 -5.0 28,798 - AZOBR_RS00190 0.54 -3.7 28,902 + AZOBR_RS00190 0.57 -2.8 29,304 + AZOBR_RS00190 0.65 -2.0 29,487 + AZOBR_RS00190 0.69 -2.6 29,488 - AZOBR_RS00190 0.69 -2.8 29,488 - AZOBR_RS00190 0.69 -4.2 29,488 - AZOBR_RS00190 0.69 -2.2 29,823 + AZOBR_RS00190 0.76 -1.7 29,823 + AZOBR_RS00190 0.76 +0.0 29,823 + AZOBR_RS00190 0.76 -3.1 29,824 - AZOBR_RS00190 0.76 -3.6 29,824 - AZOBR_RS00190 0.76 -3.1 29,824 - AZOBR_RS00190 0.76 -3.2 29,824 - AZOBR_RS00190 0.76 -1.5 29,940 + AZOBR_RS00190 0.78 -2.6 29,941 - AZOBR_RS00190 0.78 -2.9 30,024 + AZOBR_RS00190 0.80 -3.4 30,042 + AZOBR_RS00190 0.80 -1.0 30,042 + AZOBR_RS00190 0.80 +1.3 30,106 - AZOBR_RS00190 0.81 -1.5 30,280 - AZOBR_RS00190 0.85 -3.2 30,687 + -1.0 30,687 + -1.7 30,687 + -1.0 30,688 - -1.0 30,688 - -0.8 31,055 - -0.2 31,055 - -0.4 31,511 - +0.9 31,620 + +0.3 31,621 - +0.4 31,647 - +0.7 31,748 + +0.4 31,748 + -0.4 31,748 + -1.4 31,748 + +1.4 31,748 + +0.7 31,749 - -0.0 31,749 - +0.3 31,749 - +0.1 31,749 - +0.2 31,749 - -0.2 31,749 - +0.3 31,751 + +0.2 31,751 + +0.0 31,751 + +1.1 31,751 + +0.5 31,751 + +1.3 31,751 + +0.4 31,751 + +0.9 31,751 + +0.4 31,751 + -0.6 31,751 + -1.3 31,752 - +0.2 31,752 - +0.3 31,752 - -0.3 31,752 - +0.7 31,779 - +0.6 31,831 + +1.7 31,894 + +0.4 31,894 + -0.8 31,919 + -0.0
Or see this region's nucleotide sequence