Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29115

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29110 and AO353_29115 are separated by 55 nucleotidesAO353_29115 and AO353_29120 are separated by 165 nucleotidesAO353_29120 and AO353_29125 overlap by 4 nucleotides AO353_29110: AO353_29110 - FAD-dependent oxidoreductase, at 6,325,090 to 6,326,400 _29110 AO353_29115: AO353_29115 - enamine deaminase RidA, at 6,326,456 to 6,326,872 _29115 AO353_29120: AO353_29120 - fimbrial assembly protein FimA, at 6,327,038 to 6,327,715 _29120 AO353_29125: AO353_29125 - acetylornithine deacetylase, at 6,327,712 to 6,328,860 _29125 Position (kb) 6326 6327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6325.649 kb on + strand, within AO353_29110at 6325.649 kb on + strand, within AO353_29110at 6325.650 kb on - strand, within AO353_29110at 6325.650 kb on - strand, within AO353_29110at 6325.650 kb on - strand, within AO353_29110at 6325.672 kb on + strand, within AO353_29110at 6325.672 kb on + strand, within AO353_29110at 6325.672 kb on + strand, within AO353_29110at 6325.672 kb on + strand, within AO353_29110at 6325.673 kb on - strand, within AO353_29110at 6325.673 kb on - strand, within AO353_29110at 6325.805 kb on + strand, within AO353_29110at 6325.827 kb on + strand, within AO353_29110at 6325.827 kb on + strand, within AO353_29110at 6325.828 kb on - strand, within AO353_29110at 6325.828 kb on - strand, within AO353_29110at 6325.954 kb on + strand, within AO353_29110at 6325.954 kb on + strand, within AO353_29110at 6325.954 kb on + strand, within AO353_29110at 6325.954 kb on + strand, within AO353_29110at 6325.954 kb on + strand, within AO353_29110at 6325.955 kb on - strand, within AO353_29110at 6325.955 kb on - strand, within AO353_29110at 6325.955 kb on - strand, within AO353_29110at 6325.955 kb on - strand, within AO353_29110at 6325.955 kb on - strand, within AO353_29110at 6325.984 kb on + strand, within AO353_29110at 6325.984 kb on + strand, within AO353_29110at 6325.984 kb on + strand, within AO353_29110at 6326.034 kb on + strand, within AO353_29110at 6326.034 kb on + strand, within AO353_29110at 6326.035 kb on - strand, within AO353_29110at 6326.035 kb on - strand, within AO353_29110at 6326.035 kb on - strand, within AO353_29110at 6326.138 kb on - strand, within AO353_29110at 6326.199 kb on - strand, within AO353_29110at 6326.218 kb on + strand, within AO353_29110at 6326.218 kb on + strand, within AO353_29110at 6326.219 kb on - strand, within AO353_29110at 6326.219 kb on - strand, within AO353_29110at 6326.219 kb on - strand, within AO353_29110at 6326.219 kb on - strand, within AO353_29110at 6326.263 kb on - strand, within AO353_29110at 6326.263 kb on - strand, within AO353_29110at 6326.290 kb on + strandat 6326.290 kb on + strandat 6326.290 kb on + strandat 6326.291 kb on - strandat 6326.291 kb on - strandat 6326.291 kb on - strandat 6326.379 kb on + strandat 6326.379 kb on + strandat 6326.379 kb on + strandat 6326.564 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.565 kb on + strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.566 kb on - strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.567 kb on + strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.568 kb on - strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.717 kb on + strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.718 kb on - strand, within AO353_29115at 6326.751 kb on - strand, within AO353_29115at 6326.881 kb on - strandat 6326.916 kb on + strandat 6326.916 kb on + strandat 6326.917 kb on - strandat 6327.267 kb on - strand, within AO353_29120at 6327.418 kb on - strand, within AO353_29120at 6327.651 kb on - strandat 6327.651 kb on - strandat 6327.651 kb on - strandat 6327.805 kb on + strandat 6327.805 kb on + strandat 6327.806 kb on - strandat 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.841 kb on + strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125at 6327.842 kb on - strand, within AO353_29125

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,325,649 + AO353_29110 0.43 +0.8
6,325,649 + AO353_29110 0.43 +0.0
6,325,650 - AO353_29110 0.43 -1.2
6,325,650 - AO353_29110 0.43 +1.1
6,325,650 - AO353_29110 0.43 +0.8
6,325,672 + AO353_29110 0.44 +0.4
6,325,672 + AO353_29110 0.44 +0.4
6,325,672 + AO353_29110 0.44 +0.9
6,325,672 + AO353_29110 0.44 -0.2
6,325,673 - AO353_29110 0.44 -0.2
6,325,673 - AO353_29110 0.44 +0.9
6,325,805 + AO353_29110 0.55 +0.4
6,325,827 + AO353_29110 0.56 +0.8
6,325,827 + AO353_29110 0.56 -0.2
6,325,828 - AO353_29110 0.56 -0.2
6,325,828 - AO353_29110 0.56 +0.8
6,325,954 + AO353_29110 0.66 -2.2
6,325,954 + AO353_29110 0.66 +1.7
6,325,954 + AO353_29110 0.66 +0.8
6,325,954 + AO353_29110 0.66 +0.8
6,325,954 + AO353_29110 0.66 +1.6
6,325,955 - AO353_29110 0.66 +0.8
6,325,955 - AO353_29110 0.66 +0.9
6,325,955 - AO353_29110 0.66 +0.0
6,325,955 - AO353_29110 0.66 +1.1
6,325,955 - AO353_29110 0.66 +0.1
6,325,984 + AO353_29110 0.68 -0.2
6,325,984 + AO353_29110 0.68 -2.8
6,325,984 + AO353_29110 0.68 +0.0
6,326,034 + AO353_29110 0.72 +1.0
6,326,034 + AO353_29110 0.72 -1.0
6,326,035 - AO353_29110 0.72 +0.8
6,326,035 - AO353_29110 0.72 +0.4
6,326,035 - AO353_29110 0.72 +0.4
6,326,138 - AO353_29110 0.80 -0.2
6,326,199 - AO353_29110 0.85 +0.8
6,326,218 + AO353_29110 0.86 -0.6
6,326,218 + AO353_29110 0.86 +0.1
6,326,219 - AO353_29110 0.86 +1.4
6,326,219 - AO353_29110 0.86 -2.8
6,326,219 - AO353_29110 0.86 -0.8
6,326,219 - AO353_29110 0.86 -0.8
6,326,263 - AO353_29110 0.89 +0.8
6,326,263 - AO353_29110 0.89 +0.0
6,326,290 + +1.4
6,326,290 + +0.4
6,326,290 + +0.3
6,326,291 - +1.4
6,326,291 - -0.8
6,326,291 - +0.4
6,326,379 + -0.2
6,326,379 + -0.6
6,326,379 + -0.2
6,326,564 + AO353_29115 0.26 +1.2
6,326,565 + AO353_29115 0.26 +0.1
6,326,565 + AO353_29115 0.26 +0.5
6,326,565 + AO353_29115 0.26 -0.2
6,326,565 + AO353_29115 0.26 +0.0
6,326,565 + AO353_29115 0.26 +1.1
6,326,565 + AO353_29115 0.26 +1.0
6,326,565 + AO353_29115 0.26 +0.9
6,326,565 + AO353_29115 0.26 +1.5
6,326,565 + AO353_29115 0.26 -0.8
6,326,565 + AO353_29115 0.26 +0.5
6,326,565 + AO353_29115 0.26 +0.8
6,326,565 + AO353_29115 0.26 +0.8
6,326,565 + AO353_29115 0.26 +0.2
6,326,566 - AO353_29115 0.26 +1.4
6,326,566 - AO353_29115 0.26 +0.3
6,326,566 - AO353_29115 0.26 -0.5
6,326,566 - AO353_29115 0.26 -0.2
6,326,566 - AO353_29115 0.26 -0.2
6,326,566 - AO353_29115 0.26 +1.4
6,326,566 - AO353_29115 0.26 -1.8
6,326,566 - AO353_29115 0.26 +1.4
6,326,566 - AO353_29115 0.26 +0.7
6,326,566 - AO353_29115 0.26 +2.4
6,326,566 - AO353_29115 0.26 +0.1
6,326,566 - AO353_29115 0.26 +0.4
6,326,567 + AO353_29115 0.27 +1.0
6,326,567 + AO353_29115 0.27 -0.2
6,326,567 + AO353_29115 0.27 -0.6
6,326,567 + AO353_29115 0.27 -0.5
6,326,567 + AO353_29115 0.27 +0.5
6,326,567 + AO353_29115 0.27 +0.4
6,326,567 + AO353_29115 0.27 +1.1
6,326,567 + AO353_29115 0.27 +1.0
6,326,568 - AO353_29115 0.27 +0.5
6,326,568 - AO353_29115 0.27 +0.8
6,326,568 - AO353_29115 0.27 +0.2
6,326,568 - AO353_29115 0.27 +0.8
6,326,568 - AO353_29115 0.27 +0.2
6,326,568 - AO353_29115 0.27 +1.4
6,326,717 + AO353_29115 0.63 +0.4
6,326,717 + AO353_29115 0.63 +0.2
6,326,717 + AO353_29115 0.63 +0.4
6,326,717 + AO353_29115 0.63 +1.4
6,326,717 + AO353_29115 0.63 +1.5
6,326,717 + AO353_29115 0.63 +1.2
6,326,717 + AO353_29115 0.63 +1.0
6,326,717 + AO353_29115 0.63 +0.9
6,326,717 + AO353_29115 0.63 +0.8
6,326,717 + AO353_29115 0.63 +0.1
6,326,717 + AO353_29115 0.63 -1.8
6,326,718 - AO353_29115 0.63 +0.5
6,326,718 - AO353_29115 0.63 +0.5
6,326,718 - AO353_29115 0.63 +0.5
6,326,718 - AO353_29115 0.63 +2.1
6,326,751 - AO353_29115 0.71 +1.9
6,326,881 - -1.8
6,326,916 + +1.0
6,326,916 + +0.6
6,326,917 - +1.4
6,327,267 - AO353_29120 0.34 +1.4
6,327,418 - AO353_29120 0.56 +0.4
6,327,651 - -0.8
6,327,651 - -0.6
6,327,651 - +0.8
6,327,805 + -3.0
6,327,805 + -0.2
6,327,806 - -0.2
6,327,841 + AO353_29125 0.11 -0.2
6,327,841 + AO353_29125 0.11 +0.5
6,327,841 + AO353_29125 0.11 +0.4
6,327,841 + AO353_29125 0.11 +0.8
6,327,842 - AO353_29125 0.11 -1.5
6,327,842 - AO353_29125 0.11 -0.2
6,327,842 - AO353_29125 0.11 +1.4
6,327,842 - AO353_29125 0.11 -0.2
6,327,842 - AO353_29125 0.11 -0.2

Or see this region's nucleotide sequence