Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28225

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28220 and AO353_28225 are separated by 57 nucleotidesAO353_28225 and AO353_28230 are separated by 26 nucleotides AO353_28220: AO353_28220 - hydroxyacid dehydrogenase, at 6,150,831 to 6,151,757 _28220 AO353_28225: AO353_28225 - tartrate dehydrogenase, at 6,151,815 to 6,152,894 _28225 AO353_28230: AO353_28230 - succinate-semialdehyde dehydrogenase, at 6,152,921 to 6,154,378 _28230 Position (kb) 6151 6152 6153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6150.843 kb on + strandat 6150.843 kb on + strandat 6150.843 kb on + strandat 6150.844 kb on - strandat 6150.844 kb on - strandat 6150.844 kb on - strandat 6150.845 kb on + strandat 6150.845 kb on + strandat 6150.845 kb on + strandat 6150.846 kb on - strandat 6150.846 kb on - strandat 6150.846 kb on - strandat 6150.846 kb on - strandat 6150.846 kb on - strandat 6150.954 kb on + strand, within AO353_28220at 6150.954 kb on + strand, within AO353_28220at 6150.954 kb on + strand, within AO353_28220at 6150.954 kb on + strand, within AO353_28220at 6150.954 kb on + strand, within AO353_28220at 6150.955 kb on - strand, within AO353_28220at 6150.958 kb on + strand, within AO353_28220at 6150.959 kb on - strand, within AO353_28220at 6150.995 kb on - strand, within AO353_28220at 6150.995 kb on - strand, within AO353_28220at 6150.995 kb on - strand, within AO353_28220at 6151.123 kb on - strand, within AO353_28220at 6151.123 kb on - strand, within AO353_28220at 6151.351 kb on - strand, within AO353_28220at 6151.408 kb on + strand, within AO353_28220at 6151.576 kb on + strand, within AO353_28220at 6151.576 kb on + strand, within AO353_28220at 6151.577 kb on - strand, within AO353_28220at 6151.577 kb on - strand, within AO353_28220at 6151.694 kb on + strandat 6151.705 kb on - strandat 6151.759 kb on + strandat 6151.759 kb on + strandat 6151.759 kb on + strandat 6152.026 kb on + strand, within AO353_28225at 6152.026 kb on + strand, within AO353_28225at 6152.026 kb on + strand, within AO353_28225at 6152.026 kb on + strand, within AO353_28225at 6152.027 kb on - strand, within AO353_28225at 6152.027 kb on - strand, within AO353_28225at 6152.027 kb on - strand, within AO353_28225at 6152.027 kb on - strand, within AO353_28225at 6152.027 kb on - strand, within AO353_28225at 6152.294 kb on - strand, within AO353_28225at 6152.476 kb on + strand, within AO353_28225at 6152.476 kb on + strand, within AO353_28225at 6152.476 kb on + strand, within AO353_28225at 6152.477 kb on - strand, within AO353_28225at 6152.477 kb on - strand, within AO353_28225at 6152.587 kb on + strand, within AO353_28225at 6152.678 kb on - strand, within AO353_28225at 6152.678 kb on - strand, within AO353_28225at 6152.743 kb on + strand, within AO353_28225at 6152.744 kb on - strand, within AO353_28225at 6152.744 kb on - strand, within AO353_28225at 6152.744 kb on - strand, within AO353_28225at 6152.747 kb on - strand, within AO353_28225at 6152.923 kb on - strandat 6152.958 kb on + strandat 6152.958 kb on + strandat 6152.959 kb on - strandat 6152.959 kb on - strandat 6152.973 kb on + strandat 6153.120 kb on + strand, within AO353_28230at 6153.120 kb on + strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.121 kb on - strand, within AO353_28230at 6153.123 kb on + strand, within AO353_28230at 6153.182 kb on - strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.465 kb on + strand, within AO353_28230at 6153.466 kb on - strand, within AO353_28230at 6153.466 kb on - strand, within AO353_28230at 6153.466 kb on - strand, within AO353_28230at 6153.583 kb on + strand, within AO353_28230at 6153.583 kb on + strand, within AO353_28230at 6153.584 kb on - strand, within AO353_28230at 6153.584 kb on - strand, within AO353_28230at 6153.584 kb on - strand, within AO353_28230at 6153.584 kb on - strand, within AO353_28230

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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6,150,843 + +1.1
6,150,843 + +0.1
6,150,843 + -0.8
6,150,844 - -0.8
6,150,844 - -1.8
6,150,844 - -0.8
6,150,845 + -1.5
6,150,845 + +2.4
6,150,845 + +1.4
6,150,846 - +1.8
6,150,846 - -3.2
6,150,846 - -0.2
6,150,846 - +0.5
6,150,846 - -0.2
6,150,954 + AO353_28220 0.13 -0.8
6,150,954 + AO353_28220 0.13 +0.5
6,150,954 + AO353_28220 0.13 +1.0
6,150,954 + AO353_28220 0.13 +2.0
6,150,954 + AO353_28220 0.13 -1.2
6,150,955 - AO353_28220 0.13 -0.7
6,150,958 + AO353_28220 0.14 +2.4
6,150,959 - AO353_28220 0.14 -0.4
6,150,995 - AO353_28220 0.18 +0.0
6,150,995 - AO353_28220 0.18 -1.2
6,150,995 - AO353_28220 0.18 -1.2
6,151,123 - AO353_28220 0.31 +0.0
6,151,123 - AO353_28220 0.31 -1.2
6,151,351 - AO353_28220 0.56 -3.0
6,151,408 + AO353_28220 0.62 -0.2
6,151,576 + AO353_28220 0.80 +2.6
6,151,576 + AO353_28220 0.80 +2.4
6,151,577 - AO353_28220 0.80 +1.4
6,151,577 - AO353_28220 0.80 +0.8
6,151,694 + +1.2
6,151,705 - -1.2
6,151,759 + +1.7
6,151,759 + +0.8
6,151,759 + -0.2
6,152,026 + AO353_28225 0.20 +2.1
6,152,026 + AO353_28225 0.20 +1.2
6,152,026 + AO353_28225 0.20 -0.2
6,152,026 + AO353_28225 0.20 -1.8
6,152,027 - AO353_28225 0.20 +0.4
6,152,027 - AO353_28225 0.20 +0.8
6,152,027 - AO353_28225 0.20 -1.2
6,152,027 - AO353_28225 0.20 +0.2
6,152,027 - AO353_28225 0.20 +1.4
6,152,294 - AO353_28225 0.44 +0.8
6,152,476 + AO353_28225 0.61 +0.6
6,152,476 + AO353_28225 0.61 -0.2
6,152,476 + AO353_28225 0.61 +1.8
6,152,477 - AO353_28225 0.61 +1.8
6,152,477 - AO353_28225 0.61 -0.8
6,152,587 + AO353_28225 0.71 +3.0
6,152,678 - AO353_28225 0.80 -1.0
6,152,678 - AO353_28225 0.80 +1.4
6,152,743 + AO353_28225 0.86 -0.2
6,152,744 - AO353_28225 0.86 +0.1
6,152,744 - AO353_28225 0.86 +1.2
6,152,744 - AO353_28225 0.86 +2.6
6,152,747 - AO353_28225 0.86 +1.4
6,152,923 - +1.9
6,152,958 + -0.8
6,152,958 + +0.6
6,152,959 - +0.0
6,152,959 - -1.8
6,152,973 + -1.2
6,153,120 + AO353_28230 0.14 +0.4
6,153,120 + AO353_28230 0.14 +1.4
6,153,121 - AO353_28230 0.14 -1.2
6,153,121 - AO353_28230 0.14 +0.4
6,153,121 - AO353_28230 0.14 +1.6
6,153,121 - AO353_28230 0.14 +1.4
6,153,121 - AO353_28230 0.14 -0.0
6,153,121 - AO353_28230 0.14 -0.2
6,153,121 - AO353_28230 0.14 -0.2
6,153,121 - AO353_28230 0.14 -2.5
6,153,123 + AO353_28230 0.14 +1.4
6,153,182 - AO353_28230 0.18 +1.7
6,153,465 + AO353_28230 0.37 +0.8
6,153,465 + AO353_28230 0.37 +0.4
6,153,465 + AO353_28230 0.37 -0.2
6,153,465 + AO353_28230 0.37 -0.4
6,153,465 + AO353_28230 0.37 +1.4
6,153,465 + AO353_28230 0.37 +0.1
6,153,466 - AO353_28230 0.37 -0.8
6,153,466 - AO353_28230 0.37 -0.2
6,153,466 - AO353_28230 0.37 +0.4
6,153,583 + AO353_28230 0.45 +0.4
6,153,583 + AO353_28230 0.45 +1.8
6,153,584 - AO353_28230 0.45 -0.6
6,153,584 - AO353_28230 0.45 +0.4
6,153,584 - AO353_28230 0.45 +0.8
6,153,584 - AO353_28230 0.45 +0.6

Or see this region's nucleotide sequence