Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27415 and AO353_27420 are separated by 10 nucleotides AO353_27420 and AO353_27425 are separated by 158 nucleotides AO353_27425 and AO353_27430 are separated by 59 nucleotides AO353_27430 and AO353_27435 overlap by 4 nucleotides
AO353_27415: AO353_27415 - hypothetical protein, at 5,988,726 to 5,989,316
_27415
AO353_27420: AO353_27420 - DNA-binding protein, at 5,989,327 to 5,989,608
_27420
AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084
_27425
AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563
_27430
AO353_27435: AO353_27435 - hypothetical protein, at 5,990,560 to 5,990,781
_27435
Position (kb) 5989
5990 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5988.331 kb on - strand at 5988.410 kb on - strand at 5988.550 kb on - strand at 5988.719 kb on - strand at 5988.798 kb on - strand, within AO353_27415 at 5988.798 kb on - strand, within AO353_27415 at 5988.882 kb on - strand, within AO353_27415 at 5989.182 kb on - strand, within AO353_27415 at 5989.182 kb on - strand, within AO353_27415 at 5989.454 kb on - strand, within AO353_27420 at 5989.454 kb on - strand, within AO353_27420 at 5989.454 kb on - strand, within AO353_27420 at 5989.481 kb on - strand, within AO353_27420 at 5989.505 kb on - strand, within AO353_27420 at 5989.505 kb on - strand, within AO353_27420 at 5989.524 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.760 kb on + strand at 5989.760 kb on + strand at 5989.761 kb on - strand at 5989.761 kb on - strand at 5989.855 kb on + strand, within AO353_27425 at 5989.855 kb on + strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.989 kb on + strand, within AO353_27425 at 5989.990 kb on - strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.082 kb on + strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.297 kb on - strand, within AO353_27430 at 5990.307 kb on + strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.504 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,988,331 - -2.6 5,988,410 - -1.8 5,988,550 - +0.1 5,988,719 - +0.5 5,988,798 - AO353_27415 0.12 -2.2 5,988,798 - AO353_27415 0.12 +0.5 5,988,882 - AO353_27415 0.26 -0.1 5,989,182 - AO353_27415 0.77 -0.7 5,989,182 - AO353_27415 0.77 -0.2 5,989,454 - AO353_27420 0.45 -0.8 5,989,454 - AO353_27420 0.45 -1.4 5,989,454 - AO353_27420 0.45 -1.2 5,989,481 - AO353_27420 0.55 -0.2 5,989,505 - AO353_27420 0.63 +0.2 5,989,505 - AO353_27420 0.63 -1.2 5,989,524 - AO353_27420 0.70 +1.0 5,989,572 - AO353_27420 0.87 -1.8 5,989,572 - AO353_27420 0.87 -0.2 5,989,572 - AO353_27420 0.87 -0.6 5,989,572 - AO353_27420 0.87 +0.8 5,989,614 - +1.3 5,989,614 - -1.2 5,989,614 - -1.2 5,989,760 + +1.5 5,989,760 + +0.8 5,989,761 - +0.4 5,989,761 - -0.2 5,989,855 + AO353_27425 0.28 -1.4 5,989,855 + AO353_27425 0.28 +1.8 5,989,856 - AO353_27425 0.28 -0.2 5,989,856 - AO353_27425 0.28 -1.8 5,989,856 - AO353_27425 0.28 +1.2 5,989,856 - AO353_27425 0.28 -0.5 5,989,856 - AO353_27425 0.28 -0.7 5,989,887 + AO353_27425 0.38 +0.5 5,989,887 + AO353_27425 0.38 -0.2 5,989,888 - AO353_27425 0.38 +0.3 5,989,888 - AO353_27425 0.38 +2.1 5,989,888 - AO353_27425 0.38 -0.2 5,989,888 - AO353_27425 0.38 -1.2 5,989,888 - AO353_27425 0.38 +2.1 5,989,989 + AO353_27425 0.70 +1.3 5,989,990 - AO353_27425 0.70 -0.2 5,990,034 + AO353_27425 0.84 +0.3 5,990,034 + AO353_27425 0.84 -0.8 5,990,035 - AO353_27425 0.84 -1.8 5,990,035 - AO353_27425 0.84 +0.8 5,990,035 - AO353_27425 0.84 +1.2 5,990,082 + +0.1 5,990,083 - -1.2 5,990,083 - +0.8 5,990,083 - +1.0 5,990,296 + AO353_27430 0.36 +0.2 5,990,296 + AO353_27430 0.36 -0.8 5,990,296 + AO353_27430 0.36 +1.9 5,990,297 - AO353_27430 0.36 -0.2 5,990,307 + AO353_27430 0.39 +1.0 5,990,308 - AO353_27430 0.39 +0.3 5,990,308 - AO353_27430 0.39 +0.5 5,990,308 - AO353_27430 0.39 +0.6 5,990,503 + AO353_27430 0.85 +2.9 5,990,503 + AO353_27430 0.85 +0.3 5,990,504 - AO353_27430 0.86 -0.7 5,990,507 - AO353_27430 0.86 -1.8 5,990,507 - AO353_27430 0.86 +0.3
Or see this region's nucleotide sequence