Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26355

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26345 and AO353_26350 are separated by 34 nucleotidesAO353_26350 and AO353_26355 are separated by 671 nucleotidesAO353_26355 and AO353_26360 overlap by 16 nucleotides AO353_26345: AO353_26345 - hypothetical protein, at 5,783,844 to 5,784,101 _26345 AO353_26350: AO353_26350 - peptidase, at 5,784,136 to 5,784,363 _26350 AO353_26355: AO353_26355 - hypothetical protein, at 5,785,035 to 5,785,508 _26355 AO353_26360: AO353_26360 - hypothetical protein, at 5,785,493 to 5,786,467 _26360 Position (kb) 5785 5786Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5784.147 kb on + strandat 5784.185 kb on + strand, within AO353_26350at 5784.185 kb on + strand, within AO353_26350at 5784.185 kb on + strand, within AO353_26350at 5784.185 kb on + strand, within AO353_26350at 5784.185 kb on + strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.186 kb on - strand, within AO353_26350at 5784.266 kb on + strand, within AO353_26350at 5784.266 kb on + strand, within AO353_26350at 5784.272 kb on + strand, within AO353_26350at 5784.272 kb on + strand, within AO353_26350at 5784.272 kb on + strand, within AO353_26350at 5784.273 kb on - strand, within AO353_26350at 5784.273 kb on - strand, within AO353_26350at 5784.273 kb on - strand, within AO353_26350at 5784.286 kb on + strand, within AO353_26350at 5784.286 kb on + strand, within AO353_26350at 5784.286 kb on + strand, within AO353_26350at 5784.287 kb on - strand, within AO353_26350at 5784.287 kb on - strand, within AO353_26350at 5784.287 kb on - strand, within AO353_26350at 5784.362 kb on - strandat 5784.362 kb on - strandat 5784.435 kb on + strandat 5784.435 kb on + strandat 5784.435 kb on + strandat 5784.561 kb on - strandat 5784.607 kb on - strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.628 kb on + strandat 5784.629 kb on - strandat 5784.629 kb on - strandat 5784.653 kb on + strandat 5784.653 kb on + strandat 5784.654 kb on - strandat 5784.654 kb on - strandat 5784.654 kb on - strandat 5784.654 kb on - strandat 5784.654 kb on - strandat 5784.689 kb on + strandat 5784.689 kb on + strandat 5784.690 kb on - strandat 5784.690 kb on - strandat 5784.738 kb on - strandat 5784.991 kb on - strandat 5785.018 kb on + strandat 5785.019 kb on - strandat 5785.019 kb on - strandat 5785.040 kb on + strandat 5785.040 kb on + strandat 5785.040 kb on + strandat 5785.040 kb on + strandat 5785.041 kb on - strandat 5785.041 kb on - strandat 5785.041 kb on - strandat 5785.041 kb on - strandat 5785.041 kb on - strandat 5785.041 kb on - strandat 5785.051 kb on + strandat 5785.052 kb on - strandat 5785.132 kb on - strand, within AO353_26355at 5785.146 kb on + strand, within AO353_26355at 5785.147 kb on - strand, within AO353_26355at 5785.147 kb on - strand, within AO353_26355at 5785.147 kb on - strand, within AO353_26355at 5785.147 kb on - strand, within AO353_26355at 5785.149 kb on + strand, within AO353_26355at 5785.150 kb on - strand, within AO353_26355at 5785.150 kb on - strand, within AO353_26355at 5785.156 kb on + strand, within AO353_26355at 5785.187 kb on + strand, within AO353_26355at 5785.188 kb on - strand, within AO353_26355at 5785.188 kb on - strand, within AO353_26355at 5785.188 kb on - strand, within AO353_26355at 5785.202 kb on - strandat 5785.202 kb on - strand, within AO353_26355at 5785.270 kb on - strand, within AO353_26355at 5785.273 kb on + strand, within AO353_26355at 5785.273 kb on + strand, within AO353_26355at 5785.273 kb on + strand, within AO353_26355at 5785.273 kb on + strand, within AO353_26355at 5785.273 kb on + strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.274 kb on - strand, within AO353_26355at 5785.306 kb on + strand, within AO353_26355at 5785.343 kb on + strand, within AO353_26355at 5785.343 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.368 kb on + strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.369 kb on - strand, within AO353_26355at 5785.477 kb on + strandat 5785.478 kb on - strandat 5785.478 kb on - strandat 5785.478 kb on - strandat 5786.431 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,784,147 + +0.7
5,784,185 + AO353_26350 0.21 -0.8
5,784,185 + AO353_26350 0.21 +2.2
5,784,185 + AO353_26350 0.21 +0.3
5,784,185 + AO353_26350 0.21 -1.9
5,784,185 + AO353_26350 0.21 -1.3
5,784,186 - AO353_26350 0.22 -0.7
5,784,186 - AO353_26350 0.22 +1.3
5,784,186 - AO353_26350 0.22 +0.7
5,784,186 - AO353_26350 0.22 +1.0
5,784,186 - AO353_26350 0.22 -0.3
5,784,186 - AO353_26350 0.22 -1.3
5,784,266 + AO353_26350 0.57 +0.1
5,784,266 + AO353_26350 0.57 +0.3
5,784,272 + AO353_26350 0.60 -3.5
5,784,272 + AO353_26350 0.60 +1.3
5,784,272 + AO353_26350 0.60 -0.1
5,784,273 - AO353_26350 0.60 -0.3
5,784,273 - AO353_26350 0.60 -0.0
5,784,273 - AO353_26350 0.60 +0.3
5,784,286 + AO353_26350 0.66 +0.4
5,784,286 + AO353_26350 0.66 -1.3
5,784,286 + AO353_26350 0.66 +0.7
5,784,287 - AO353_26350 0.66 +0.7
5,784,287 - AO353_26350 0.66 -0.9
5,784,287 - AO353_26350 0.66 +0.5
5,784,362 - +1.0
5,784,362 - +0.3
5,784,435 + +0.9
5,784,435 + +2.0
5,784,435 + -1.3
5,784,561 - +1.3
5,784,607 - +0.4
5,784,628 + -0.3
5,784,628 + +0.7
5,784,628 + +1.0
5,784,628 + +2.7
5,784,628 + +0.7
5,784,628 + +0.2
5,784,628 + -1.4
5,784,628 + +1.7
5,784,628 + -0.9
5,784,628 + -0.7
5,784,629 - -0.3
5,784,629 - -1.9
5,784,653 + +0.7
5,784,653 + +1.4
5,784,654 - +0.6
5,784,654 - -0.7
5,784,654 - -0.1
5,784,654 - +1.7
5,784,654 - +0.7
5,784,689 + +1.0
5,784,689 + +1.3
5,784,690 - -0.3
5,784,690 - -2.9
5,784,738 - -0.4
5,784,991 - -1.2
5,785,018 + -0.3
5,785,019 - +1.5
5,785,019 - +1.2
5,785,040 + +1.2
5,785,040 + +0.3
5,785,040 + +0.7
5,785,040 + -0.3
5,785,041 - +0.6
5,785,041 - +1.5
5,785,041 - +0.0
5,785,041 - +0.1
5,785,041 - -0.9
5,785,041 - -1.3
5,785,051 + +2.0
5,785,052 - -1.0
5,785,132 - AO353_26355 0.20 +0.1
5,785,146 + AO353_26355 0.23 -0.9
5,785,147 - AO353_26355 0.24 +1.5
5,785,147 - AO353_26355 0.24 -0.3
5,785,147 - AO353_26355 0.24 +0.7
5,785,147 - AO353_26355 0.24 +1.3
5,785,149 + AO353_26355 0.24 +0.3
5,785,150 - AO353_26355 0.24 -0.3
5,785,150 - AO353_26355 0.24 -1.6
5,785,156 + AO353_26355 0.26 -0.3
5,785,187 + AO353_26355 0.32 +0.5
5,785,188 - AO353_26355 0.32 -1.9
5,785,188 - AO353_26355 0.32 +0.1
5,785,188 - AO353_26355 0.32 +1.0
5,785,202 - +1.7
5,785,202 - AO353_26355 0.35 +0.5
5,785,270 - AO353_26355 0.50 -0.3
5,785,273 + AO353_26355 0.50 +1.3
5,785,273 + AO353_26355 0.50 -0.3
5,785,273 + AO353_26355 0.50 +0.9
5,785,273 + AO353_26355 0.50 +2.3
5,785,273 + AO353_26355 0.50 +1.5
5,785,274 - AO353_26355 0.50 -1.3
5,785,274 - AO353_26355 0.50 +1.3
5,785,274 - AO353_26355 0.50 -0.9
5,785,274 - AO353_26355 0.50 +2.3
5,785,274 - AO353_26355 0.50 -0.5
5,785,274 - AO353_26355 0.50 +0.3
5,785,274 - AO353_26355 0.50 +1.0
5,785,306 + AO353_26355 0.57 +1.7
5,785,343 + AO353_26355 0.65 -0.3
5,785,343 + AO353_26355 0.65 +0.7
5,785,368 + AO353_26355 0.70 -1.3
5,785,368 + AO353_26355 0.70 +0.4
5,785,368 + AO353_26355 0.70 -0.3
5,785,368 + AO353_26355 0.70 +0.7
5,785,368 + AO353_26355 0.70 +1.7
5,785,368 + AO353_26355 0.70 -0.3
5,785,368 + AO353_26355 0.70 +1.5
5,785,368 + AO353_26355 0.70 -1.9
5,785,368 + AO353_26355 0.70 +1.3
5,785,368 + AO353_26355 0.70 +2.2
5,785,369 - AO353_26355 0.70 +1.7
5,785,369 - AO353_26355 0.70 +2.2
5,785,369 - AO353_26355 0.70 +1.3
5,785,369 - AO353_26355 0.70 +1.0
5,785,369 - AO353_26355 0.70 +1.0
5,785,369 - AO353_26355 0.70 +1.1
5,785,369 - AO353_26355 0.70 +0.7
5,785,369 - AO353_26355 0.70 +1.3
5,785,369 - AO353_26355 0.70 +0.3
5,785,369 - AO353_26355 0.70 +2.3
5,785,369 - AO353_26355 0.70 +0.0
5,785,369 - AO353_26355 0.70 +1.0
5,785,369 - AO353_26355 0.70 -0.6
5,785,369 - AO353_26355 0.70 +2.6
5,785,477 + -0.3
5,785,478 - +3.3
5,785,478 - +0.3
5,785,478 - +0.3
5,786,431 + -0.3

Or see this region's nucleotide sequence