Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_24980 and AO353_24985 are separated by 86 nucleotides AO353_24985 and AO353_24990 overlap by 4 nucleotides
AO353_24980: AO353_24980 - formate dehydrogenase accessory protein FdhE, at 5,509,574 to 5,510,500
_24980
AO353_24985: AO353_24985 - L-seryl-tRNA(Sec) selenium transferase, at 5,510,587 to 5,512,017
_24985
AO353_24990: AO353_24990 - translation elongation factor, at 5,512,014 to 5,513,933
_24990
Position (kb) 5510
5511
5512
5513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5509.656 kb on - strand at 5509.739 kb on + strand, within AO353_24980 at 5509.740 kb on - strand, within AO353_24980 at 5509.740 kb on - strand, within AO353_24980 at 5509.806 kb on + strand, within AO353_24980 at 5509.807 kb on - strand, within AO353_24980 at 5510.003 kb on + strand, within AO353_24980 at 5510.004 kb on - strand at 5510.004 kb on - strand, within AO353_24980 at 5510.178 kb on - strand, within AO353_24980 at 5510.250 kb on - strand, within AO353_24980 at 5510.277 kb on - strand, within AO353_24980 at 5510.277 kb on - strand, within AO353_24980 at 5510.277 kb on - strand, within AO353_24980 at 5510.277 kb on - strand, within AO353_24980 at 5510.277 kb on - strand, within AO353_24980 at 5510.354 kb on + strand, within AO353_24980 at 5510.355 kb on - strand, within AO353_24980 at 5510.355 kb on - strand, within AO353_24980 at 5510.355 kb on - strand, within AO353_24980 at 5510.369 kb on + strand, within AO353_24980 at 5510.369 kb on + strand, within AO353_24980 at 5510.512 kb on - strand at 5510.621 kb on + strand at 5510.622 kb on - strand at 5510.622 kb on - strand at 5510.781 kb on - strand, within AO353_24985 at 5510.868 kb on + strand, within AO353_24985 at 5510.868 kb on + strand, within AO353_24985 at 5510.868 kb on + strand, within AO353_24985 at 5510.869 kb on - strand, within AO353_24985 at 5511.267 kb on - strand, within AO353_24985 at 5511.281 kb on - strand, within AO353_24985 at 5511.351 kb on - strand, within AO353_24985 at 5511.613 kb on + strand, within AO353_24985 at 5511.726 kb on - strand, within AO353_24985 at 5512.182 kb on - strand at 5512.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,509,656 - +0.3 5,509,739 + AO353_24980 0.18 +1.3 5,509,740 - AO353_24980 0.18 +0.1 5,509,740 - AO353_24980 0.18 +0.7 5,509,806 + AO353_24980 0.25 -0.6 5,509,807 - AO353_24980 0.25 +0.6 5,510,003 + AO353_24980 0.46 +0.9 5,510,004 - -0.3 5,510,004 - AO353_24980 0.46 -1.0 5,510,178 - AO353_24980 0.65 -0.9 5,510,250 - AO353_24980 0.73 -1.9 5,510,277 - AO353_24980 0.76 +0.4 5,510,277 - AO353_24980 0.76 -2.3 5,510,277 - AO353_24980 0.76 -0.9 5,510,277 - AO353_24980 0.76 +2.5 5,510,277 - AO353_24980 0.76 +0.0 5,510,354 + AO353_24980 0.84 +1.3 5,510,355 - AO353_24980 0.84 +1.3 5,510,355 - AO353_24980 0.84 +0.3 5,510,355 - AO353_24980 0.84 -0.9 5,510,369 + AO353_24980 0.86 +0.8 5,510,369 + AO353_24980 0.86 +2.4 5,510,512 - +2.3 5,510,621 + -1.9 5,510,622 - +1.3 5,510,622 - +0.2 5,510,781 - AO353_24985 0.14 +1.7 5,510,868 + AO353_24985 0.20 -2.3 5,510,868 + AO353_24985 0.20 +0.0 5,510,868 + AO353_24985 0.20 -1.0 5,510,869 - AO353_24985 0.20 -0.3 5,511,267 - AO353_24985 0.48 +0.3 5,511,281 - AO353_24985 0.48 -0.9 5,511,351 - AO353_24985 0.53 -0.3 5,511,613 + AO353_24985 0.72 -0.9 5,511,726 - AO353_24985 0.80 -0.0 5,512,182 - +0.2 5,512,182 - +0.7
Or see this region's nucleotide sequence