Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21845

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21835 and AO353_21840 are separated by 33 nucleotidesAO353_21840 and AO353_21845 are separated by 63 nucleotidesAO353_21845 and AO353_21850 are separated by 969 nucleotides AO353_21835: AO353_21835 - excinuclease ABC subunit C, at 4,788,511 to 4,790,334 _21835 AO353_21840: AO353_21840 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 4,790,368 to 4,790,928 _21840 AO353_21845: AO353_21845 - tRNA-Gly, at 4,790,992 to 4,791,067 _21845 AO353_21850: AO353_21850 - diguanylate cyclase, at 4,792,037 to 4,793,551 _21850 Position (kb) 4790 4791 4792Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4790.026 kb on + strand, within AO353_21835at 4790.027 kb on - strand, within AO353_21835at 4790.149 kb on - strand, within AO353_21835at 4790.311 kb on + strandat 4790.311 kb on + strandat 4790.311 kb on + strandat 4790.311 kb on + strandat 4790.311 kb on + strandat 4790.332 kb on + strandat 4790.332 kb on + strandat 4790.332 kb on + strandat 4790.969 kb on + strandat 4791.088 kb on + strandat 4791.088 kb on + strandat 4791.115 kb on - strandat 4791.115 kb on - strandat 4791.119 kb on + strandat 4791.119 kb on + strandat 4791.120 kb on - strandat 4791.125 kb on + strandat 4791.125 kb on + strandat 4791.125 kb on + strandat 4791.125 kb on + strandat 4791.126 kb on - strandat 4791.126 kb on - strandat 4791.126 kb on - strandat 4791.126 kb on - strandat 4791.126 kb on - strandat 4791.126 kb on - strandat 4791.142 kb on + strandat 4791.143 kb on - strandat 4791.161 kb on + strandat 4791.162 kb on - strandat 4791.192 kb on + strandat 4791.192 kb on + strandat 4791.193 kb on - strandat 4791.235 kb on + strandat 4791.235 kb on + strandat 4791.286 kb on - strandat 4791.302 kb on - strandat 4791.321 kb on + strandat 4791.322 kb on - strandat 4791.380 kb on - strandat 4791.409 kb on + strandat 4791.410 kb on - strandat 4791.410 kb on - strandat 4791.488 kb on + strandat 4791.727 kb on + strandat 4791.727 kb on + strandat 4791.728 kb on - strandat 4791.748 kb on - strandat 4791.768 kb on + strandat 4791.769 kb on - strandat 4791.769 kb on - strandat 4791.769 kb on - strandat 4791.769 kb on - strandat 4791.818 kb on + strandat 4791.818 kb on + strandat 4791.819 kb on - strandat 4791.827 kb on + strandat 4791.828 kb on - strandat 4791.851 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.872 kb on + strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.873 kb on - strandat 4791.950 kb on - strandat 4791.958 kb on - strandat 4791.958 kb on - strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.964 kb on + strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.965 kb on - strandat 4791.981 kb on + strandat 4792.002 kb on + strandat 4792.038 kb on + strandat 4792.038 kb on + strandat 4792.038 kb on + strandat 4792.038 kb on + strandat 4792.038 kb on + strandat 4792.038 kb on + strandat 4792.039 kb on - strandat 4792.063 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,790,026 + AO353_21835 0.83 -1.8
4,790,027 - AO353_21835 0.83 +1.8
4,790,149 - AO353_21835 0.90 +1.3
4,790,311 + -0.8
4,790,311 + -0.2
4,790,311 + -0.2
4,790,311 + -0.2
4,790,311 + -0.2
4,790,332 + -0.2
4,790,332 + +0.8
4,790,332 + +1.9
4,790,969 + -0.6
4,791,088 + +0.2
4,791,088 + +0.5
4,791,115 - -0.2
4,791,115 - -0.0
4,791,119 + -1.2
4,791,119 + -1.6
4,791,120 - -1.6
4,791,125 + +0.9
4,791,125 + +0.3
4,791,125 + +1.1
4,791,125 + +0.3
4,791,126 - -0.8
4,791,126 - +0.0
4,791,126 - -0.2
4,791,126 - +1.1
4,791,126 - -1.0
4,791,126 - +0.3
4,791,142 + +0.1
4,791,143 - +1.0
4,791,161 + -1.2
4,791,162 - +0.2
4,791,192 + +0.9
4,791,192 + +0.1
4,791,193 - +3.2
4,791,235 + +0.0
4,791,235 + +2.1
4,791,286 - -0.8
4,791,302 - +1.3
4,791,321 + +0.8
4,791,322 - +1.0
4,791,380 - +0.6
4,791,409 + +0.8
4,791,410 - -0.2
4,791,410 - -2.6
4,791,488 + -2.2
4,791,727 + -0.7
4,791,727 + +0.8
4,791,728 - -0.8
4,791,748 - -0.8
4,791,768 + +1.3
4,791,769 - +1.8
4,791,769 - +1.6
4,791,769 - +1.1
4,791,769 - +0.6
4,791,818 + -0.5
4,791,818 + -0.2
4,791,819 - +0.8
4,791,827 + +0.6
4,791,828 - -0.2
4,791,851 + +2.3
4,791,872 + +0.5
4,791,872 + -2.2
4,791,872 + -0.2
4,791,872 + +1.1
4,791,872 + +1.1
4,791,872 + +0.0
4,791,872 + +0.2
4,791,872 + +0.3
4,791,872 + +0.9
4,791,872 + +0.8
4,791,872 + -0.2
4,791,873 - +2.1
4,791,873 - +0.5
4,791,873 - -0.7
4,791,873 - +1.5
4,791,873 - +2.3
4,791,873 - +1.3
4,791,873 - -0.4
4,791,873 - -0.7
4,791,950 - -0.2
4,791,958 - +2.1
4,791,958 - +2.3
4,791,964 + +0.3
4,791,964 + -0.2
4,791,964 + -0.5
4,791,964 + -1.6
4,791,964 + -0.7
4,791,964 + +0.2
4,791,964 + +0.6
4,791,964 + +1.3
4,791,964 + -0.1
4,791,964 + +1.3
4,791,964 + +1.8
4,791,965 - +0.7
4,791,965 - -1.4
4,791,965 - +0.8
4,791,965 - +1.1
4,791,965 - +0.5
4,791,965 - +1.2
4,791,965 - -0.7
4,791,965 - -3.1
4,791,965 - -0.8
4,791,965 - +0.2
4,791,965 - +1.1
4,791,981 + -0.2
4,792,002 + -1.8
4,792,038 + -0.2
4,792,038 + -0.2
4,792,038 + -0.4
4,792,038 + -0.8
4,792,038 + -0.1
4,792,038 + -1.2
4,792,039 - -1.0
4,792,063 + -0.2

Or see this region's nucleotide sequence