Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15390 and AO353_15395 are separated by 255 nucleotides AO353_15395 and AO353_15400 are separated by 8 nucleotides
AO353_15390: AO353_15390 - histidine kinase, at 3,401,000 to 3,402,370
_15390
AO353_15395: AO353_15395 - transcriptional regulator, at 3,402,626 to 3,403,300
_15395
AO353_15400: AO353_15400 - acriflavine resistance protein B, at 3,403,309 to 3,406,404
_15400
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3401.664 kb on + strand, within AO353_15390 at 3401.665 kb on - strand, within AO353_15390 at 3401.665 kb on - strand, within AO353_15390 at 3401.665 kb on - strand, within AO353_15390 at 3401.665 kb on - strand, within AO353_15390 at 3401.665 kb on - strand, within AO353_15390 at 3401.856 kb on - strand, within AO353_15390 at 3401.910 kb on + strand, within AO353_15390 at 3401.910 kb on + strand at 3401.910 kb on + strand, within AO353_15390 at 3401.910 kb on + strand, within AO353_15390 at 3401.910 kb on + strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3401.911 kb on - strand, within AO353_15390 at 3402.020 kb on + strand, within AO353_15390 at 3402.021 kb on - strand, within AO353_15390 at 3402.021 kb on - strand, within AO353_15390 at 3402.021 kb on - strand, within AO353_15390 at 3402.081 kb on + strand, within AO353_15390 at 3402.082 kb on - strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.087 kb on + strand, within AO353_15390 at 3402.088 kb on - strand, within AO353_15390 at 3402.088 kb on - strand, within AO353_15390 at 3402.184 kb on + strand, within AO353_15390 at 3402.185 kb on - strand, within AO353_15390 at 3402.212 kb on + strand, within AO353_15390 at 3402.213 kb on - strand, within AO353_15390 at 3402.220 kb on - strand, within AO353_15390 at 3402.220 kb on - strand, within AO353_15390 at 3402.276 kb on + strand at 3402.277 kb on - strand at 3402.277 kb on - strand at 3402.363 kb on + strand at 3402.363 kb on + strand at 3402.364 kb on - strand at 3402.383 kb on - strand at 3402.448 kb on + strand at 3402.448 kb on + strand at 3402.448 kb on + strand at 3402.449 kb on - strand at 3402.449 kb on - strand at 3402.449 kb on - strand at 3402.449 kb on - strand at 3402.449 kb on - strand at 3402.449 kb on - strand at 3402.603 kb on + strand at 3402.603 kb on + strand at 3402.622 kb on + strand at 3402.623 kb on - strand at 3402.623 kb on - strand at 3402.623 kb on - strand at 3402.627 kb on + strand at 3402.627 kb on + strand at 3402.628 kb on - strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.651 kb on + strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3402.652 kb on - strand at 3403.011 kb on + strand, within AO353_15395 at 3403.011 kb on + strand, within AO353_15395 at 3403.012 kb on - strand, within AO353_15395 at 3403.012 kb on - strand, within AO353_15395 at 3403.227 kb on + strand, within AO353_15395 at 3403.227 kb on + strand, within AO353_15395 at 3403.227 kb on + strand, within AO353_15395 at 3403.228 kb on - strand, within AO353_15395 at 3403.228 kb on - strand, within AO353_15395 at 3403.257 kb on + strand at 3403.257 kb on + strand at 3403.257 kb on + strand at 3403.257 kb on + strand at 3403.257 kb on + strand at 3403.257 kb on + strand at 3403.258 kb on - strand at 3403.258 kb on - strand at 3403.258 kb on - strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.369 kb on + strand at 3403.370 kb on - strand at 3403.370 kb on - strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.373 kb on + strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.374 kb on - strand at 3403.375 kb on + strand at 3403.375 kb on + strand at 3403.375 kb on + strand at 3403.375 kb on + strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.376 kb on - strand at 3403.389 kb on + strand at 3403.390 kb on - strand at 3403.390 kb on - strand at 3403.708 kb on + strand, within AO353_15400 at 3403.708 kb on + strand, within AO353_15400 at 3403.709 kb on - strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.775 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.796 kb on + strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.797 kb on - strand, within AO353_15400 at 3403.798 kb on + strand, within AO353_15400 at 3403.799 kb on - strand, within AO353_15400 at 3404.093 kb on + strand, within AO353_15400 at 3404.093 kb on + strand, within AO353_15400 at 3404.094 kb on - strand, within AO353_15400 at 3404.094 kb on - strand, within AO353_15400 at 3404.099 kb on + strand, within AO353_15400 at 3404.099 kb on + strand, within AO353_15400 at 3404.099 kb on + strand, within AO353_15400 at 3404.099 kb on + strand, within AO353_15400 at 3404.100 kb on - strand, within AO353_15400 at 3404.100 kb on - strand, within AO353_15400 at 3404.156 kb on + strand, within AO353_15400 at 3404.156 kb on + strand, within AO353_15400 at 3404.157 kb on - strand, within AO353_15400 at 3404.157 kb on - strand, within AO353_15400 at 3404.157 kb on - strand, within AO353_15400 at 3404.165 kb on - strand, within AO353_15400 at 3404.210 kb on + strand, within AO353_15400 at 3404.211 kb on - strand, within AO353_15400
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,401,664 + AO353_15390 0.48 +0.5 3,401,665 - AO353_15390 0.49 +0.7 3,401,665 - AO353_15390 0.49 +1.4 3,401,665 - AO353_15390 0.49 +0.4 3,401,665 - AO353_15390 0.49 +2.1 3,401,665 - AO353_15390 0.49 -1.5 3,401,856 - AO353_15390 0.62 +0.7 3,401,910 + AO353_15390 0.66 +1.7 3,401,910 + +0.1 3,401,910 + AO353_15390 0.66 +0.1 3,401,910 + AO353_15390 0.66 -1.1 3,401,910 + AO353_15390 0.66 +2.7 3,401,911 - AO353_15390 0.66 +0.7 3,401,911 - AO353_15390 0.66 -0.2 3,401,911 - AO353_15390 0.66 +0.1 3,401,911 - AO353_15390 0.66 -0.5 3,401,911 - AO353_15390 0.66 +2.6 3,401,911 - AO353_15390 0.66 -0.6 3,401,911 - AO353_15390 0.66 -0.6 3,402,020 + AO353_15390 0.74 +0.8 3,402,021 - AO353_15390 0.74 +0.5 3,402,021 - AO353_15390 0.74 -0.3 3,402,021 - AO353_15390 0.74 +1.5 3,402,081 + AO353_15390 0.79 -0.3 3,402,082 - AO353_15390 0.79 +0.6 3,402,087 + AO353_15390 0.79 +0.1 3,402,087 + AO353_15390 0.79 -0.1 3,402,087 + AO353_15390 0.79 +1.3 3,402,087 + AO353_15390 0.79 +1.5 3,402,087 + AO353_15390 0.79 -0.9 3,402,087 + AO353_15390 0.79 +0.1 3,402,088 - AO353_15390 0.79 -0.5 3,402,088 - AO353_15390 0.79 -0.7 3,402,184 + AO353_15390 0.86 +0.5 3,402,185 - AO353_15390 0.86 +0.8 3,402,212 + AO353_15390 0.88 +1.5 3,402,213 - AO353_15390 0.88 +1.1 3,402,220 - AO353_15390 0.89 +0.3 3,402,220 - AO353_15390 0.89 +1.7 3,402,276 + -0.9 3,402,277 - +0.7 3,402,277 - -0.5 3,402,363 + -1.5 3,402,363 + -0.5 3,402,364 - -0.4 3,402,383 - +0.2 3,402,448 + +0.4 3,402,448 + -0.9 3,402,448 + +1.4 3,402,449 - -1.5 3,402,449 - -1.7 3,402,449 - -1.5 3,402,449 - -0.5 3,402,449 - +0.5 3,402,449 - +2.7 3,402,603 + +0.1 3,402,603 + +1.5 3,402,622 + -0.2 3,402,623 - +1.1 3,402,623 - -1.1 3,402,623 - +0.1 3,402,627 + +0.1 3,402,627 + +0.7 3,402,628 - -0.7 3,402,651 + +0.1 3,402,651 + -1.5 3,402,651 + -0.2 3,402,651 + +1.4 3,402,651 + -0.5 3,402,651 + -0.5 3,402,651 + +0.7 3,402,652 - +1.1 3,402,652 - +0.7 3,402,652 - -0.6 3,402,652 - -0.3 3,402,652 - +1.7 3,402,652 - +1.4 3,402,652 - +1.1 3,402,652 - +1.0 3,402,652 - +0.6 3,403,011 + AO353_15395 0.57 -0.3 3,403,011 + AO353_15395 0.57 -0.3 3,403,012 - AO353_15395 0.57 -0.9 3,403,012 - AO353_15395 0.57 -0.1 3,403,227 + AO353_15395 0.89 +0.1 3,403,227 + AO353_15395 0.89 +0.1 3,403,227 + AO353_15395 0.89 +0.9 3,403,228 - AO353_15395 0.89 +0.1 3,403,228 - AO353_15395 0.89 -1.9 3,403,257 + -0.9 3,403,257 + +0.7 3,403,257 + +2.0 3,403,257 + +0.1 3,403,257 + -0.5 3,403,257 + -1.9 3,403,258 - +1.1 3,403,258 - +1.1 3,403,258 - +0.9 3,403,369 + +1.7 3,403,369 + -0.5 3,403,369 + +1.1 3,403,369 + -0.3 3,403,369 + -0.3 3,403,369 + -0.1 3,403,369 + +0.7 3,403,369 + -0.9 3,403,370 - +2.1 3,403,370 - +1.5 3,403,373 + +0.5 3,403,373 + +1.7 3,403,373 + +1.1 3,403,373 + +1.6 3,403,373 + +0.5 3,403,373 + +0.1 3,403,373 + +0.3 3,403,373 + +0.1 3,403,373 + +1.4 3,403,373 + +1.4 3,403,373 + +1.7 3,403,373 + -0.3 3,403,373 + +2.6 3,403,373 + -0.8 3,403,373 + -1.5 3,403,373 + +0.1 3,403,373 + +0.1 3,403,373 + +0.7 3,403,373 + +0.1 3,403,373 + +2.6 3,403,373 + +0.5 3,403,373 + +2.0 3,403,373 + -1.5 3,403,373 + +0.4 3,403,373 + +1.1 3,403,373 + +1.2 3,403,373 + -0.5 3,403,373 + -0.6 3,403,373 + +0.3 3,403,373 + +1.5 3,403,374 - +0.1 3,403,374 - +0.1 3,403,374 - -1.5 3,403,374 - -0.4 3,403,374 - +1.6 3,403,374 - -0.3 3,403,374 - +1.3 3,403,374 - +0.4 3,403,374 - -0.3 3,403,374 - -0.3 3,403,374 - +1.1 3,403,374 - +0.4 3,403,374 - +0.9 3,403,374 - -0.5 3,403,374 - +0.7 3,403,374 - -0.3 3,403,374 - -1.9 3,403,374 - -0.3 3,403,374 - -0.8 3,403,374 - +0.1 3,403,374 - -2.5 3,403,374 - +0.8 3,403,375 + -0.1 3,403,375 + -0.3 3,403,375 + -1.1 3,403,375 + +0.8 3,403,376 - -0.1 3,403,376 - +0.1 3,403,376 - +2.4 3,403,376 - +0.7 3,403,376 - -0.3 3,403,376 - +1.4 3,403,376 - -0.0 3,403,376 - -0.3 3,403,376 - +0.3 3,403,389 + +0.1 3,403,390 - +0.7 3,403,390 - +0.1 3,403,708 + AO353_15400 0.13 -0.3 3,403,708 + AO353_15400 0.13 +0.8 3,403,709 - AO353_15400 0.13 -1.2 3,403,775 + AO353_15400 0.15 +1.5 3,403,775 + AO353_15400 0.15 -0.6 3,403,775 + AO353_15400 0.15 +0.9 3,403,775 + AO353_15400 0.15 +0.1 3,403,775 + AO353_15400 0.15 +1.7 3,403,775 + AO353_15400 0.15 -0.5 3,403,796 + AO353_15400 0.16 +1.7 3,403,796 + AO353_15400 0.16 -1.5 3,403,796 + AO353_15400 0.16 +2.7 3,403,796 + AO353_15400 0.16 +0.2 3,403,796 + AO353_15400 0.16 +1.3 3,403,796 + AO353_15400 0.16 +1.1 3,403,796 + AO353_15400 0.16 +1.1 3,403,796 + AO353_15400 0.16 -1.5 3,403,796 + AO353_15400 0.16 +1.9 3,403,796 + AO353_15400 0.16 +1.3 3,403,796 + AO353_15400 0.16 +1.1 3,403,796 + AO353_15400 0.16 +1.1 3,403,796 + AO353_15400 0.16 -0.2 3,403,796 + AO353_15400 0.16 +1.7 3,403,796 + AO353_15400 0.16 +1.2 3,403,796 + AO353_15400 0.16 +0.3 3,403,796 + AO353_15400 0.16 -0.5 3,403,796 + AO353_15400 0.16 +1.7 3,403,796 + AO353_15400 0.16 -1.7 3,403,796 + AO353_15400 0.16 +0.4 3,403,796 + AO353_15400 0.16 +0.4 3,403,796 + AO353_15400 0.16 +0.6 3,403,796 + AO353_15400 0.16 +1.4 3,403,796 + AO353_15400 0.16 +0.1 3,403,797 - AO353_15400 0.16 -0.1 3,403,797 - AO353_15400 0.16 +0.1 3,403,797 - AO353_15400 0.16 -0.3 3,403,797 - AO353_15400 0.16 +0.1 3,403,797 - AO353_15400 0.16 +1.1 3,403,797 - AO353_15400 0.16 -0.3 3,403,797 - AO353_15400 0.16 +1.5 3,403,797 - +0.1 3,403,797 - AO353_15400 0.16 +0.6 3,403,797 - AO353_15400 0.16 -1.5 3,403,797 - AO353_15400 0.16 +1.1 3,403,797 - AO353_15400 0.16 -0.9 3,403,797 - AO353_15400 0.16 +2.1 3,403,797 - AO353_15400 0.16 +2.9 3,403,797 - AO353_15400 0.16 +1.1 3,403,797 - AO353_15400 0.16 +1.1 3,403,797 - AO353_15400 0.16 +1.1 3,403,797 - AO353_15400 0.16 -0.5 3,403,797 - AO353_15400 0.16 +0.1 3,403,797 - AO353_15400 0.16 +2.8 3,403,797 - AO353_15400 0.16 -1.5 3,403,797 - AO353_15400 0.16 +0.9 3,403,797 - AO353_15400 0.16 +1.7 3,403,797 - AO353_15400 0.16 +1.0 3,403,797 - AO353_15400 0.16 -0.9 3,403,797 - AO353_15400 0.16 +0.7 3,403,797 - AO353_15400 0.16 -0.9 3,403,797 - AO353_15400 0.16 +0.8 3,403,797 - AO353_15400 0.16 +1.4 3,403,797 - AO353_15400 0.16 -0.5 3,403,797 - AO353_15400 0.16 +0.4 3,403,798 + AO353_15400 0.16 +1.1 3,403,799 - AO353_15400 0.16 +1.7 3,404,093 + AO353_15400 0.25 +1.3 3,404,093 + AO353_15400 0.25 +0.1 3,404,094 - AO353_15400 0.25 +0.6 3,404,094 - AO353_15400 0.25 +0.1 3,404,099 + AO353_15400 0.26 +0.3 3,404,099 + AO353_15400 0.26 +0.7 3,404,099 + AO353_15400 0.26 +1.7 3,404,099 + AO353_15400 0.26 +0.5 3,404,100 - AO353_15400 0.26 +0.1 3,404,100 - AO353_15400 0.26 -1.5 3,404,156 + AO353_15400 0.27 +1.1 3,404,156 + AO353_15400 0.27 -0.9 3,404,157 - AO353_15400 0.27 +0.1 3,404,157 - AO353_15400 0.27 -0.5 3,404,157 - AO353_15400 0.27 +0.1 3,404,165 - AO353_15400 0.28 -0.5 3,404,210 + AO353_15400 0.29 -0.5 3,404,211 - AO353_15400 0.29 -1.5
Or see this region's nucleotide sequence