Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06705 and AO353_06710 are separated by 31 nucleotides AO353_06710 and AO353_06715 are separated by 48 nucleotides
AO353_06705: AO353_06705 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 1,492,818 to 1,493,909
_06705
AO353_06710: AO353_06710 - riboflavin synthase subunit alpha, at 1,493,941 to 1,494,603
_06710
AO353_06715: AO353_06715 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 1,494,652 to 1,495,785
_06715
Position (kb)
1493
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1494.026 kb on - strand, within AO353_06710 at 1494.026 kb on - strand, within AO353_06710 at 1494.026 kb on - strand, within AO353_06710 at 1494.026 kb on - strand, within AO353_06710 at 1494.653 kb on + strand at 1494.653 kb on + strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.654 kb on - strand at 1494.655 kb on + strand at 1494.655 kb on + strand at 1494.655 kb on + strand at 1494.655 kb on + strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand at 1494.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,494,026 - AO353_06710 0.13 -0.4 1,494,026 - AO353_06710 0.13 +0.2 1,494,026 - AO353_06710 0.13 -0.4 1,494,026 - AO353_06710 0.13 -0.4 1,494,653 + -0.8 1,494,653 + -1.8 1,494,654 - +1.8 1,494,654 - -0.4 1,494,654 - -1.8 1,494,654 - +0.4 1,494,654 - +0.8 1,494,654 - +0.5 1,494,654 - -0.1 1,494,655 + -1.0 1,494,655 + -0.3 1,494,655 + -0.8 1,494,655 + +0.2 1,494,656 - +0.2 1,494,656 - -1.2 1,494,656 - +0.5 1,494,656 - +2.8 1,494,656 - -0.9 1,494,656 - +0.2 1,494,656 - +1.2 1,494,656 - +0.2
Or see this region's nucleotide sequence