Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03220 and AO353_03225 are separated by 324 nucleotides AO353_03225 and AO353_03230 are separated by 66 nucleotides AO353_03230 and AO353_03235 are separated by 229 nucleotides
AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851
_03220
AO353_03225: AO353_03225 - transcriptional regulator, at 686,176 to 686,664
_03225
AO353_03230: AO353_03230 - lysine transporter LysE, at 686,731 to 687,393
_03230
AO353_03235: AO353_03235 - glutamate-pyruvate aminotransferase, at 687,623 to 688,828
_03235
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 685.738 kb on + strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.739 kb on - strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.772 kb on + strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.773 kb on - strand, within AO353_03220 at 685.890 kb on - strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.894 kb on + strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.895 kb on - strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.897 kb on + strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.898 kb on - strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.940 kb on + strand at 685.941 kb on - strand at 685.941 kb on - strand at 685.941 kb on - strand at 685.942 kb on + strand at 685.972 kb on + strand at 685.973 kb on - strand at 686.020 kb on + strand at 686.021 kb on - strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.041 kb on + strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.042 kb on - strand at 686.053 kb on + strand at 686.054 kb on - strand at 686.054 kb on - strand at 686.071 kb on + strand at 686.072 kb on - strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.119 kb on + strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.120 kb on - strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.123 kb on + strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.124 kb on - strand at 686.246 kb on + strand, within AO353_03225 at 686.246 kb on + strand, within AO353_03225 at 686.247 kb on - strand, within AO353_03225 at 686.279 kb on + strand, within AO353_03225 at 686.280 kb on - strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.312 kb on + strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.313 kb on - strand, within AO353_03225 at 686.367 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.381 kb on - strand, within AO353_03225 at 686.397 kb on - strand, within AO353_03225 at 686.444 kb on + strand, within AO353_03225 at 686.444 kb on + strand, within AO353_03225 at 686.445 kb on - strand, within AO353_03225 at 686.460 kb on + strand, within AO353_03225 at 686.486 kb on + strand, within AO353_03225 at 686.486 kb on + strand, within AO353_03225 at 686.487 kb on - strand, within AO353_03225 at 686.487 kb on - strand, within AO353_03225 at 686.491 kb on + strand, within AO353_03225 at 686.492 kb on - strand, within AO353_03225 at 686.492 kb on - strand, within AO353_03225 at 686.704 kb on + strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.705 kb on - strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.706 kb on + strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.707 kb on - strand at 686.799 kb on - strand, within AO353_03230 at 686.799 kb on - strand, within AO353_03230 at 686.810 kb on + strand at 686.837 kb on + strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 686.838 kb on - strand, within AO353_03230 at 687.025 kb on - strand, within AO353_03230 at 687.106 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.152 kb on + strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.153 kb on - strand, within AO353_03230 at 687.203 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.245 kb on + strand, within AO353_03230 at 687.246 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.248 kb on - strand, within AO353_03230 at 687.408 kb on - strand at 687.408 kb on - strand at 687.408 kb on - strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.416 kb on + strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.417 kb on - strand at 687.424 kb on + strand at 687.425 kb on - strand at 687.497 kb on - strand at 687.506 kb on + strand at 687.506 kb on + strand at 687.547 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.604 kb on + strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.605 kb on - strand at 687.610 kb on - strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.660 kb on + strand at 687.661 kb on - strand at 687.661 kb on - strand at 687.661 kb on - strand at 687.677 kb on + strand at 687.677 kb on + strand at 687.677 kb on + strand at 687.678 kb on - strand at 687.678 kb on - strand at 687.678 kb on - strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.681 kb on + strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.682 kb on - strand at 687.688 kb on + strand at 687.688 kb on + strand at 687.847 kb on + strand, within AO353_03235 at 687.848 kb on - strand, within AO353_03235 at 687.848 kb on - strand, within AO353_03235 at 687.881 kb on + strand, within AO353_03235 at 687.894 kb on - strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.031 kb on + strand, within AO353_03235 at 688.032 kb on - strand, within AO353_03235 at 688.032 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.230 kb on - strand, within AO353_03235 at 688.260 kb on - strand, within AO353_03235 at 688.274 kb on + strand, within AO353_03235 at 688.274 kb on + strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.275 kb on - strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.358 kb on + strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235 at 688.359 kb on - strand, within AO353_03235
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 685,738 + AO353_03220 0.77 +1.7 685,739 - AO353_03220 0.77 +2.3 685,739 - AO353_03220 0.77 +2.8 685,739 - AO353_03220 0.77 -1.6 685,772 + AO353_03220 0.84 -0.0 685,772 + AO353_03220 0.84 -0.0 685,772 + AO353_03220 0.84 +0.7 685,772 + AO353_03220 0.84 +2.2 685,772 + AO353_03220 0.84 -0.0 685,772 + AO353_03220 0.84 +0.3 685,773 - AO353_03220 0.84 -0.0 685,773 - AO353_03220 0.84 -1.8 685,773 - AO353_03220 0.84 -1.3 685,773 - AO353_03220 0.84 -0.0 685,773 - AO353_03220 0.84 +0.6 685,773 - AO353_03220 0.84 -1.3 685,773 - AO353_03220 0.84 +1.7 685,773 - AO353_03220 0.84 +1.2 685,773 - AO353_03220 0.84 +1.3 685,773 - AO353_03220 0.84 -1.0 685,773 - AO353_03220 0.84 -0.4 685,773 - AO353_03220 0.84 +1.0 685,773 - AO353_03220 0.84 +1.3 685,773 - AO353_03220 0.84 +1.0 685,773 - AO353_03220 0.84 -0.2 685,890 - +1.0 685,894 + -0.0 685,894 + +0.9 685,894 + -1.9 685,894 + +0.6 685,894 + -0.0 685,895 - -0.8 685,895 - +2.3 685,895 - +0.9 685,895 - +2.0 685,895 - -0.6 685,895 - -0.6 685,897 + +1.3 685,897 + +1.0 685,897 + +1.6 685,897 + -0.0 685,898 - +2.2 685,898 - -0.2 685,898 - -1.0 685,898 - -1.0 685,940 + +2.8 685,940 + +1.0 685,940 + -1.6 685,940 + +1.8 685,940 + -1.0 685,940 + -0.0 685,940 + -1.0 685,940 + -0.6 685,941 - -1.0 685,941 - +0.5 685,941 - +1.6 685,942 + -1.6 685,972 + -0.0 685,973 - +2.0 686,020 + -0.8 686,021 - -2.3 686,041 + -0.0 686,041 + -1.0 686,041 + -1.0 686,041 + +0.9 686,041 + -2.0 686,041 + +0.8 686,041 + +0.2 686,041 + -0.2 686,041 + -0.0 686,041 + -0.9 686,041 + -1.0 686,041 + -1.0 686,041 + -0.3 686,041 + +1.6 686,041 + +1.6 686,041 + +1.3 686,041 + -0.0 686,041 + -0.2 686,042 - +0.2 686,042 - -0.3 686,042 - -0.0 686,042 - +2.0 686,042 - +1.1 686,042 - -1.0 686,042 - -0.5 686,042 - +1.2 686,042 - +0.6 686,042 - +1.2 686,042 - -0.0 686,042 - -0.0 686,042 - +1.4 686,053 + -0.0 686,054 - +1.2 686,054 - -0.2 686,071 + -1.6 686,072 - +1.0 686,119 + -0.0 686,119 + -0.0 686,119 + +0.3 686,119 + -0.3 686,119 + -0.6 686,120 - +0.6 686,120 - -0.0 686,120 - +1.4 686,120 - -0.4 686,120 - +2.3 686,120 - -0.3 686,120 - +3.0 686,120 - -1.0 686,120 - +1.6 686,120 - -0.5 686,123 + +1.6 686,123 + +0.3 686,123 + -0.8 686,123 + +2.2 686,123 + +0.2 686,123 + +1.0 686,124 - -0.0 686,124 - +0.6 686,124 - +0.6 686,124 - +2.6 686,124 - -0.0 686,124 - +1.6 686,124 - +1.0 686,246 + AO353_03225 0.14 -0.3 686,246 + AO353_03225 0.14 -0.6 686,247 - AO353_03225 0.15 +1.0 686,279 + AO353_03225 0.21 +1.6 686,280 - AO353_03225 0.21 -2.2 686,312 + AO353_03225 0.28 +2.9 686,312 + AO353_03225 0.28 +0.7 686,312 + AO353_03225 0.28 +0.8 686,312 + AO353_03225 0.28 +0.4 686,312 + AO353_03225 0.28 +0.2 686,312 + AO353_03225 0.28 +1.0 686,312 + AO353_03225 0.28 -0.0 686,312 + AO353_03225 0.28 +1.0 686,312 + AO353_03225 0.28 -0.6 686,312 + AO353_03225 0.28 -0.0 686,312 + AO353_03225 0.28 -2.3 686,313 - AO353_03225 0.28 -1.6 686,313 - AO353_03225 0.28 +0.2 686,313 - AO353_03225 0.28 -1.6 686,313 - AO353_03225 0.28 +1.6 686,313 - AO353_03225 0.28 +1.3 686,313 - AO353_03225 0.28 -0.0 686,313 - AO353_03225 0.28 +0.4 686,313 - AO353_03225 0.28 +0.5 686,313 - AO353_03225 0.28 +0.9 686,313 - AO353_03225 0.28 -0.0 686,367 - AO353_03225 0.39 +2.3 686,381 - AO353_03225 0.42 +2.3 686,381 - AO353_03225 0.42 -0.5 686,381 - AO353_03225 0.42 -0.0 686,381 - AO353_03225 0.42 +0.6 686,381 - AO353_03225 0.42 -1.0 686,381 - AO353_03225 0.42 -3.6 686,397 - AO353_03225 0.45 -1.0 686,444 + AO353_03225 0.55 +1.2 686,444 + AO353_03225 0.55 +1.4 686,445 - AO353_03225 0.55 +1.6 686,460 + AO353_03225 0.58 -0.7 686,486 + AO353_03225 0.63 +0.6 686,486 + AO353_03225 0.63 -0.0 686,487 - AO353_03225 0.64 +1.0 686,487 - AO353_03225 0.64 +0.2 686,491 + AO353_03225 0.64 +0.7 686,492 - AO353_03225 0.65 +1.6 686,492 - AO353_03225 0.65 -0.2 686,704 + -0.2 686,705 - -0.6 686,705 - +1.2 686,705 - +0.5 686,705 - +0.3 686,705 - +1.0 686,705 - +0.6 686,705 - +1.0 686,705 - -0.0 686,706 + +1.3 686,706 + -0.3 686,706 + -0.6 686,706 + -1.3 686,706 + -0.4 686,706 + +0.1 686,706 + -0.8 686,707 - -0.3 686,707 - +1.4 686,707 - +2.0 686,707 - -2.0 686,707 - -1.4 686,707 - -0.2 686,707 - -0.0 686,707 - +0.6 686,707 - +0.7 686,707 - -0.0 686,707 - +1.0 686,707 - +3.0 686,799 - AO353_03230 0.10 -0.0 686,799 - AO353_03230 0.10 -2.8 686,810 + -0.6 686,837 + AO353_03230 0.16 -1.0 686,838 - AO353_03230 0.16 -3.0 686,838 - AO353_03230 0.16 +1.8 687,025 - AO353_03230 0.44 -1.6 687,106 + AO353_03230 0.57 -0.0 687,152 + AO353_03230 0.63 -1.0 687,152 + AO353_03230 0.63 -0.2 687,153 - AO353_03230 0.64 +1.0 687,153 - AO353_03230 0.64 +0.4 687,203 + AO353_03230 0.71 +0.3 687,245 + AO353_03230 0.78 -1.0 687,245 + AO353_03230 0.78 +2.3 687,246 - AO353_03230 0.78 -0.0 687,248 - AO353_03230 0.78 -3.0 687,248 - AO353_03230 0.78 -1.2 687,408 - -0.0 687,408 - +1.0 687,408 - -0.0 687,416 + -0.0 687,416 + +0.6 687,416 + -0.0 687,416 + +0.8 687,416 + +0.5 687,416 + -0.0 687,417 - +0.4 687,417 - +1.0 687,417 - +1.3 687,417 - -1.0 687,424 + +2.3 687,425 - +1.3 687,497 - +0.5 687,506 + -0.3 687,506 + +0.1 687,547 + -0.0 687,604 + -0.0 687,604 + -0.8 687,604 + -1.0 687,604 + +0.8 687,605 - +1.7 687,605 - +1.3 687,605 - +0.2 687,605 - +0.6 687,610 - +2.0 687,660 + +0.4 687,660 + -1.6 687,660 + +1.0 687,660 + -1.3 687,660 + -1.0 687,660 + -0.0 687,661 - -2.3 687,661 - +0.6 687,661 - +0.2 687,677 + +2.8 687,677 + +0.6 687,677 + -0.5 687,678 - -0.0 687,678 - -0.2 687,678 - +0.2 687,681 + +3.0 687,681 + -0.8 687,681 + +1.0 687,681 + +1.0 687,681 + -0.0 687,681 + +0.3 687,681 + -1.3 687,681 + -1.6 687,681 + -0.4 687,682 - -1.0 687,682 - -0.0 687,682 - +0.7 687,682 - +1.1 687,682 - +0.6 687,682 - -0.3 687,682 - -0.0 687,682 - +1.6 687,688 + -2.3 687,688 + -1.0 687,847 + AO353_03235 0.19 +2.1 687,848 - AO353_03235 0.19 +1.0 687,848 - AO353_03235 0.19 -1.8 687,881 + AO353_03235 0.21 +0.3 687,894 - AO353_03235 0.22 -0.0 688,031 + AO353_03235 0.34 +2.8 688,031 + AO353_03235 0.34 -0.0 688,031 + AO353_03235 0.34 +1.6 688,032 - AO353_03235 0.34 -0.6 688,032 - AO353_03235 0.34 -1.0 688,230 - AO353_03235 0.50 +1.6 688,230 - AO353_03235 0.50 -0.0 688,230 - AO353_03235 0.50 +1.0 688,260 - AO353_03235 0.53 +1.0 688,274 + AO353_03235 0.54 -1.3 688,274 + AO353_03235 0.54 +0.3 688,275 - AO353_03235 0.54 -0.6 688,275 - AO353_03235 0.54 +1.8 688,275 - AO353_03235 0.54 +0.2 688,358 + AO353_03235 0.61 +0.7 688,358 + AO353_03235 0.61 +1.3 688,358 + AO353_03235 0.61 +0.3 688,358 + AO353_03235 0.61 -0.0 688,359 - AO353_03235 0.61 -0.0 688,359 - AO353_03235 0.61 -0.0 688,359 - AO353_03235 0.61 -1.2 688,359 - AO353_03235 0.61 +1.2 688,359 - AO353_03235 0.61 +2.8 688,359 - AO353_03235 0.61 +2.2 688,359 - AO353_03235 0.61 +1.5
Or see this region's nucleotide sequence