Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02515 and AO353_02520 are separated by 145 nucleotides AO353_02520 and AO353_02525 are separated by 118 nucleotides AO353_02525 and AO353_02530 are separated by 91 nucleotides
AO353_02515: AO353_02515 - recombination-associated protein RdgC, at 535,589 to 536,509
_02515
AO353_02520: AO353_02520 - sodium transporter, at 536,655 to 537,620
_02520
AO353_02525: AO353_02525 - molecular chaperone, at 537,739 to 538,059
_02525
AO353_02530: AO353_02530 - glycerol acyltransferase, at 538,151 to 540,025
_02530
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.712 kb on + strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.713 kb on - strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.758 kb on + strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.759 kb on - strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.886 kb on + strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.887 kb on - strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.888 kb on + strand, within AO353_02515 at 535.949 kb on - strand, within AO353_02515 at 536.076 kb on + strand, within AO353_02515 at 536.077 kb on - strand, within AO353_02515 at 536.160 kb on + strand, within AO353_02515 at 536.161 kb on - strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.266 kb on + strand, within AO353_02515 at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.507 kb on + strand at 536.508 kb on - strand at 536.516 kb on + strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.546 kb on - strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.578 kb on + strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.579 kb on - strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.583 kb on + strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.584 kb on - strand at 536.601 kb on - strand at 536.628 kb on + strand at 536.637 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.639 kb on + strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.640 kb on - strand at 536.725 kb on + strand at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.351 kb on - strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.375 kb on + strand, within AO353_02520 at 537.558 kb on + strand at 537.558 kb on + strand at 537.558 kb on + strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.559 kb on - strand at 537.626 kb on + strand at 537.646 kb on + strand at 537.647 kb on - strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.656 kb on + strand at 537.658 kb on + strand at 537.658 kb on + strand at 537.658 kb on + strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.659 kb on - strand at 537.698 kb on + strand at 537.698 kb on + strand at 537.698 kb on + strand at 537.699 kb on - strand at 537.699 kb on - strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.701 kb on + strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.702 kb on - strand at 537.802 kb on + strand, within AO353_02525 at 537.802 kb on + strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.803 kb on - strand, within AO353_02525 at 537.804 kb on + strand, within AO353_02525 at 537.804 kb on + strand, within AO353_02525 at 537.805 kb on - strand, within AO353_02525 at 537.805 kb on - strand, within AO353_02525 at 537.858 kb on - strand, within AO353_02525 at 537.858 kb on - strand, within AO353_02525 at 537.914 kb on - strand, within AO353_02525 at 537.914 kb on - strand, within AO353_02525 at 538.057 kb on + strand at 538.057 kb on + strand at 538.057 kb on + strand at 538.058 kb on - strand at 538.058 kb on - strand at 538.088 kb on - strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.093 kb on + strand at 538.094 kb on - strand at 538.094 kb on - strand at 538.100 kb on + strand at 538.101 kb on - strand at 538.101 kb on - strand at 538.109 kb on - strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.152 kb on + strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.153 kb on - strand at 538.156 kb on + strand at 538.156 kb on + strand at 538.156 kb on + strand at 538.157 kb on - strand at 538.449 kb on + strand, within AO353_02530 at 538.449 kb on + strand, within AO353_02530 at 538.450 kb on - strand, within AO353_02530 at 538.558 kb on + strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.559 kb on - strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.560 kb on + strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.561 kb on - strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.569 kb on + strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.570 kb on - strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.572 kb on + strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530 at 538.573 kb on - strand, within AO353_02530
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 535,712 + AO353_02515 0.13 -0.1 535,712 + AO353_02515 0.13 -2.1 535,712 + AO353_02515 0.13 -0.3 535,712 + AO353_02515 0.13 -0.5 535,712 + AO353_02515 0.13 +0.4 535,713 - AO353_02515 0.13 +0.1 535,713 - AO353_02515 0.13 +0.2 535,713 - AO353_02515 0.13 +1.1 535,758 + AO353_02515 0.18 -0.1 535,758 + AO353_02515 0.18 +0.9 535,758 + AO353_02515 0.18 -0.6 535,758 + AO353_02515 0.18 +0.8 535,758 + AO353_02515 0.18 -1.6 535,758 + AO353_02515 0.18 -2.6 535,759 - AO353_02515 0.18 +1.8 535,759 - AO353_02515 0.18 -0.5 535,759 - AO353_02515 0.18 +1.8 535,759 - AO353_02515 0.18 +0.9 535,759 - AO353_02515 0.18 +0.4 535,759 - AO353_02515 0.18 +0.7 535,759 - AO353_02515 0.18 +1.3 535,886 + AO353_02515 0.32 -0.1 535,886 + AO353_02515 0.32 +1.9 535,887 - AO353_02515 0.32 +0.7 535,887 - AO353_02515 0.32 +2.3 535,887 - AO353_02515 0.32 +0.7 535,887 - AO353_02515 0.32 -0.4 535,888 + AO353_02515 0.32 +0.9 535,888 + AO353_02515 0.32 +0.9 535,888 + AO353_02515 0.32 -2.1 535,949 - AO353_02515 0.39 +0.9 536,076 + AO353_02515 0.53 -0.8 536,077 - AO353_02515 0.53 +0.9 536,160 + AO353_02515 0.62 -0.1 536,161 - AO353_02515 0.62 -1.1 536,266 + AO353_02515 0.74 -1.6 536,266 + AO353_02515 0.74 -2.1 536,507 + -0.4 536,507 + -0.1 536,507 + +2.5 536,507 + -0.6 536,507 + +0.4 536,508 - +0.7 536,516 + -0.2 536,546 - +1.7 536,546 - +0.7 536,546 - +0.7 536,546 - -0.8 536,546 - -1.3 536,546 - -1.6 536,578 + +0.5 536,578 + -1.1 536,578 + +0.8 536,578 + +1.9 536,578 + -1.1 536,579 - -1.1 536,579 - +0.9 536,579 - +0.4 536,579 - +2.1 536,579 - +1.5 536,583 + +0.9 536,583 + +0.9 536,583 + +0.4 536,583 + +1.2 536,583 + -0.4 536,583 + +2.3 536,583 + -0.1 536,584 - +2.3 536,584 - +1.8 536,584 - +1.2 536,584 - +0.4 536,584 - -2.1 536,584 - -1.1 536,601 - +1.2 536,628 + +1.8 536,637 + -0.1 536,639 + +1.4 536,639 + +2.8 536,639 + -0.5 536,639 + +0.5 536,639 + -0.6 536,639 + +0.7 536,639 + +0.5 536,639 + +0.4 536,639 + +1.2 536,639 + -1.1 536,639 + -1.1 536,640 - -0.1 536,640 - +1.5 536,640 - -1.1 536,640 - -0.9 536,640 - +0.7 536,640 - +0.9 536,640 - +0.5 536,640 - -1.2 536,640 - +0.8 536,640 - +0.9 536,640 - -0.1 536,640 - +0.9 536,640 - -0.8 536,640 - -0.5 536,640 - +1.2 536,640 - -1.4 536,640 - +0.2 536,640 - -2.1 536,640 - -0.1 536,640 - +0.5 536,640 - +1.5 536,640 - -0.8 536,725 + -2.1 537,351 - AO353_02520 0.72 -1.2 537,351 - AO353_02520 0.72 -1.6 537,351 - AO353_02520 0.72 -0.4 537,375 + AO353_02520 0.75 +0.5 537,375 + AO353_02520 0.75 -0.1 537,558 + -0.1 537,558 + -1.6 537,558 + -0.1 537,559 - -1.1 537,559 - -0.1 537,559 - -0.1 537,559 - -0.3 537,559 - +0.4 537,559 - +0.9 537,559 - -0.1 537,626 + +1.1 537,646 + +0.3 537,647 - -0.1 537,656 + +1.2 537,656 + +0.5 537,656 + -0.1 537,656 + +0.5 537,658 + -0.6 537,658 + +0.9 537,658 + -0.9 537,659 - -1.6 537,659 - +0.9 537,659 - +2.1 537,659 - +1.5 537,698 + +1.1 537,698 + +0.3 537,698 + -1.1 537,699 - -0.2 537,699 - -0.5 537,701 + +0.2 537,701 + -1.1 537,701 + +1.3 537,701 + +0.9 537,701 + -2.1 537,701 + -1.5 537,702 - -0.1 537,702 - +0.5 537,702 - +0.8 537,702 - +0.8 537,702 - +0.3 537,702 - -0.1 537,802 + AO353_02525 0.20 +0.9 537,802 + AO353_02525 0.20 +0.5 537,803 - AO353_02525 0.20 +0.9 537,803 - AO353_02525 0.20 +0.5 537,803 - AO353_02525 0.20 +1.9 537,803 - AO353_02525 0.20 -1.4 537,803 - AO353_02525 0.20 +0.5 537,804 + AO353_02525 0.20 -0.1 537,804 + AO353_02525 0.20 -0.1 537,805 - AO353_02525 0.21 +1.9 537,805 - AO353_02525 0.21 -0.6 537,858 - AO353_02525 0.37 -0.6 537,858 - AO353_02525 0.37 +2.3 537,914 - AO353_02525 0.55 -0.3 537,914 - AO353_02525 0.55 +0.4 538,057 + +0.3 538,057 + -1.1 538,057 + +0.8 538,058 - +1.2 538,058 - +1.9 538,088 - +2.5 538,093 + -2.4 538,093 + +0.9 538,093 + +0.5 538,093 + +0.3 538,093 + +0.5 538,094 - -0.4 538,094 - +1.4 538,100 + +2.3 538,101 - +0.9 538,101 - -2.4 538,109 - -0.8 538,152 + +0.3 538,152 + -1.1 538,152 + +1.8 538,152 + -0.1 538,153 - +0.7 538,153 - +1.4 538,153 - -0.1 538,153 - +1.3 538,156 + -0.6 538,156 + -0.1 538,156 + -0.4 538,157 - -0.1 538,449 + AO353_02530 0.16 -2.4 538,449 + AO353_02530 0.16 +1.6 538,450 - AO353_02530 0.16 -0.6 538,558 + AO353_02530 0.22 +0.5 538,559 - AO353_02530 0.22 -0.3 538,559 - -0.1 538,559 - AO353_02530 0.22 -0.1 538,559 - AO353_02530 0.22 -0.1 538,559 - AO353_02530 0.22 +0.8 538,559 - AO353_02530 0.22 -2.1 538,559 - AO353_02530 0.22 +0.7 538,560 + AO353_02530 0.22 +0.1 538,560 + AO353_02530 0.22 +0.4 538,560 + AO353_02530 0.22 -1.1 538,560 + AO353_02530 0.22 -1.1 538,560 + AO353_02530 0.22 +1.3 538,560 + AO353_02530 0.22 +2.1 538,560 + AO353_02530 0.22 -0.1 538,560 + AO353_02530 0.22 +0.4 538,561 - AO353_02530 0.22 -1.6 538,561 - AO353_02530 0.22 -0.1 538,561 - AO353_02530 0.22 +1.9 538,561 - AO353_02530 0.22 -0.5 538,561 - AO353_02530 0.22 -2.6 538,561 - AO353_02530 0.22 +0.5 538,561 - AO353_02530 0.22 +1.4 538,561 - AO353_02530 0.22 -1.1 538,561 - AO353_02530 0.22 -0.1 538,561 - AO353_02530 0.22 +1.9 538,569 + AO353_02530 0.22 -0.6 538,569 + AO353_02530 0.22 +1.4 538,569 + AO353_02530 0.22 +1.5 538,569 + AO353_02530 0.22 +0.4 538,569 + AO353_02530 0.22 -1.1 538,569 + AO353_02530 0.22 +1.5 538,569 + AO353_02530 0.22 +0.9 538,569 + AO353_02530 0.22 +1.3 538,569 + AO353_02530 0.22 +1.1 538,569 + AO353_02530 0.22 -1.6 538,570 - AO353_02530 0.22 +1.9 538,570 - AO353_02530 0.22 +0.9 538,570 - AO353_02530 0.22 +0.7 538,570 - AO353_02530 0.22 -1.1 538,570 - AO353_02530 0.22 -0.1 538,572 + AO353_02530 0.22 -0.1 538,572 + AO353_02530 0.22 +0.9 538,572 + AO353_02530 0.22 +0.9 538,572 + AO353_02530 0.22 -0.4 538,572 + AO353_02530 0.22 +0.8 538,572 + AO353_02530 0.22 -0.1 538,572 + AO353_02530 0.22 +0.1 538,572 + AO353_02530 0.22 -0.5 538,572 + AO353_02530 0.22 -1.1 538,572 + AO353_02530 0.22 +1.5 538,573 - AO353_02530 0.23 -0.2 538,573 - AO353_02530 0.23 +0.9 538,573 - AO353_02530 0.23 +0.7
Or see this region's nucleotide sequence