Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02215 and AO353_02220 are separated by 404 nucleotides AO353_02220 and AO353_02225 are separated by 67 nucleotides AO353_02225 and AO353_02230 are separated by 245 nucleotides AO353_02230 and AO353_02235 are separated by 4 nucleotides
AO353_02215: AO353_02215 - long-chain acyl-CoA synthetase, at 474,773 to 476,611
_02215
AO353_02220: AO353_02220 - hypothetical protein, at 477,016 to 477,294
_02220
AO353_02225: AO353_02225 - LuxR family transcriptional regulator, at 477,362 to 477,595
_02225
AO353_02230: AO353_02230 - haloacid dehalogenase, at 477,841 to 478,524
_02230
AO353_02235: AO353_02235 - acireductone dioxygenase, at 478,529 to 479,074
_02235
Position (kb) 477
478 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 476.397 kb on + strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.398 kb on - strand, within AO353_02215 at 476.443 kb on + strand at 476.563 kb on + strand at 476.563 kb on + strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.564 kb on - strand at 476.652 kb on + strand at 476.680 kb on + strand at 476.681 kb on - strand at 476.681 kb on - strand at 476.719 kb on - strand at 476.735 kb on + strand at 476.736 kb on - strand at 476.736 kb on - strand at 476.773 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.795 kb on + strand at 476.971 kb on + strand at 477.112 kb on - strand, within AO353_02220 at 477.148 kb on + strand, within AO353_02220 at 477.280 kb on + strand at 477.280 kb on + strand at 477.280 kb on + strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.281 kb on - strand at 477.292 kb on + strand at 477.292 kb on + strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.293 kb on - strand at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.432 kb on + strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.433 kb on - strand, within AO353_02225 at 477.522 kb on + strand, within AO353_02225 at 477.523 kb on - strand, within AO353_02225 at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.599 kb on + strand at 477.652 kb on - strand at 477.665 kb on + strand at 477.665 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.680 kb on + strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.681 kb on - strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.696 kb on + strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.697 kb on - strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.704 kb on + strand at 477.705 kb on - strand at 477.705 kb on - strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.735 kb on + strand at 477.736 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.754 kb on - strand at 477.762 kb on + strand at 477.763 kb on - strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.787 kb on + strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand at 477.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 476,397 + AO353_02215 0.88 -0.6 476,398 - AO353_02215 0.88 +0.5 476,398 - AO353_02215 0.88 +0.5 476,398 - AO353_02215 0.88 +2.4 476,398 - AO353_02215 0.88 -0.1 476,443 + -0.8 476,563 + +1.5 476,563 + -0.1 476,564 - -0.4 476,564 - -0.6 476,564 - +1.3 476,652 + +0.3 476,680 + -1.1 476,681 - +1.5 476,681 - +1.5 476,719 - -1.6 476,735 + +0.4 476,736 - -2.1 476,736 - +0.3 476,773 + -0.1 476,795 + -0.6 476,795 + -1.6 476,795 + -0.1 476,971 + +1.5 477,112 - AO353_02220 0.34 -1.1 477,148 + AO353_02220 0.47 +0.1 477,280 + -0.1 477,280 + +1.5 477,280 + +0.9 477,281 - +1.8 477,281 - -0.1 477,281 - -2.4 477,292 + +0.2 477,292 + +0.7 477,293 - -1.1 477,293 - -0.1 477,293 - +1.8 477,293 - +1.9 477,293 - -0.6 477,293 - -1.6 477,293 - -0.6 477,293 - -0.5 477,432 + AO353_02225 0.30 +0.9 477,432 + AO353_02225 0.30 -0.1 477,432 + AO353_02225 0.30 +0.3 477,432 + AO353_02225 0.30 +1.3 477,432 + AO353_02225 0.30 +0.9 477,433 - AO353_02225 0.30 -0.1 477,433 - AO353_02225 0.30 -1.4 477,433 - AO353_02225 0.30 +0.9 477,433 - AO353_02225 0.30 -0.3 477,433 - AO353_02225 0.30 -0.7 477,522 + AO353_02225 0.68 +0.9 477,523 - AO353_02225 0.69 +0.4 477,599 + -1.1 477,599 + +0.6 477,599 + +1.9 477,599 + +3.5 477,652 - -1.6 477,665 + -0.1 477,665 + +0.7 477,680 + -0.1 477,680 + +0.9 477,680 + -0.1 477,680 + -0.5 477,680 + +0.6 477,681 - +1.5 477,681 - -0.3 477,681 - +1.9 477,696 + -2.1 477,696 + +0.9 477,696 + +0.2 477,696 + +1.0 477,696 + +0.0 477,697 - +1.9 477,697 - -0.8 477,697 - -0.1 477,697 - +0.2 477,704 + +2.5 477,704 + +1.9 477,704 + +0.7 477,704 + +1.5 477,705 - +0.3 477,705 - -1.6 477,735 + -0.6 477,735 + -0.6 477,735 + -1.1 477,736 - +0.3 477,754 - +2.5 477,754 - -0.1 477,754 - -0.6 477,762 + -2.4 477,763 - +0.9 477,787 + -0.9 477,787 + +0.3 477,787 + -0.1 477,788 - -0.5 477,788 - -0.5 477,788 - +2.3 477,788 - +1.9 477,788 - +0.9 477,788 - +0.3
Or see this region's nucleotide sequence