Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01600 and AO353_01605 are separated by 2 nucleotides AO353_01605 and AO353_01610 are separated by 27 nucleotides AO353_01610 and AO353_01615 are separated by 158 nucleotides AO353_01615 and AO353_01620 are separated by 432 nucleotides
AO353_01600: AO353_01600 - AAA family ATPase, at 340,537 to 341,868
_01600
AO353_01605: AO353_01605 - hypothetical protein, at 341,871 to 342,401
_01605
AO353_01610: AO353_01610 - pilus assembly protein PilA, at 342,429 to 342,626
_01610
AO353_01615: AO353_01615 - pilus assembly protein PilA, at 342,785 to 342,982
_01615
AO353_01620: AO353_01620 - AraC family transcriptional regulator, at 343,415 to 344,281
_01620
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.905 kb on + strand at 341.916 kb on + strand at 341.916 kb on + strand at 341.916 kb on + strand at 341.922 kb on - strand at 341.989 kb on + strand, within AO353_01605 at 342.033 kb on + strand, within AO353_01605 at 342.057 kb on + strand, within AO353_01605 at 342.058 kb on - strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.187 kb on + strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.188 kb on - strand, within AO353_01605 at 342.262 kb on + strand, within AO353_01605 at 342.262 kb on + strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.263 kb on - strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.317 kb on + strand, within AO353_01605 at 342.363 kb on + strand at 342.364 kb on - strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.369 kb on + strand at 342.370 kb on - strand at 342.370 kb on - strand at 342.381 kb on + strand at 342.382 kb on - strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.424 kb on + strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.425 kb on - strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.666 kb on + strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.667 kb on - strand at 342.675 kb on - strand at 342.696 kb on - strand at 342.799 kb on + strand at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.886 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.909 kb on + strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.910 kb on - strand, within AO353_01615 at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.967 kb on + strand at 342.968 kb on - strand at 342.968 kb on - strand at 342.968 kb on - strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.041 kb on + strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.042 kb on - strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.045 kb on + strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.046 kb on - strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.050 kb on + strand at 343.051 kb on - strand at 343.074 kb on + strand at 343.075 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.173 kb on - strand at 343.257 kb on + strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.258 kb on - strand at 343.261 kb on + strand at 343.262 kb on - strand at 343.294 kb on - strand at 343.294 kb on - strand at 343.302 kb on + strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.303 kb on - strand at 343.334 kb on + strand at 343.335 kb on - strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.363 kb on + strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.364 kb on - strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.366 kb on + strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.367 kb on - strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.408 kb on + strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.409 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.718 kb on + strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.719 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.789 kb on - strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.910 kb on + strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620 at 343.911 kb on - strand, within AO353_01620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 341,905 + +0.4 341,916 + +0.9 341,916 + +0.1 341,916 + -0.7 341,922 - -1.1 341,989 + AO353_01605 0.22 +0.9 342,033 + AO353_01605 0.31 -0.5 342,057 + AO353_01605 0.35 -0.1 342,058 - AO353_01605 0.35 -1.7 342,187 + AO353_01605 0.60 +0.9 342,187 + AO353_01605 0.60 +0.6 342,187 + AO353_01605 0.60 -1.4 342,187 + AO353_01605 0.60 +1.5 342,187 + AO353_01605 0.60 +0.8 342,187 + AO353_01605 0.60 +0.2 342,187 + AO353_01605 0.60 +1.7 342,187 + AO353_01605 0.60 -0.7 342,187 + AO353_01605 0.60 +1.5 342,187 + AO353_01605 0.60 +0.4 342,188 - AO353_01605 0.60 -0.1 342,188 - AO353_01605 0.60 +0.4 342,188 - AO353_01605 0.60 +0.9 342,188 - AO353_01605 0.60 -0.1 342,188 - AO353_01605 0.60 -0.7 342,188 - AO353_01605 0.60 +0.9 342,188 - AO353_01605 0.60 +0.9 342,188 - AO353_01605 0.60 -0.3 342,262 + AO353_01605 0.74 -0.1 342,262 + AO353_01605 0.74 -0.5 342,263 - AO353_01605 0.74 +1.0 342,263 - AO353_01605 0.74 -2.7 342,263 - AO353_01605 0.74 -0.3 342,263 - AO353_01605 0.74 +0.1 342,317 + AO353_01605 0.84 +1.9 342,317 + AO353_01605 0.84 -0.8 342,317 + AO353_01605 0.84 -0.3 342,363 + +1.7 342,364 - -0.1 342,369 + +0.9 342,369 + +1.9 342,369 + -0.3 342,369 + -0.1 342,370 - +1.9 342,370 - -0.1 342,381 + -1.5 342,382 - +1.2 342,424 + +1.9 342,424 + +1.5 342,424 + +0.9 342,424 + -0.1 342,424 + +2.0 342,425 - +1.9 342,425 - -0.7 342,425 - +1.5 342,666 + -0.1 342,666 + +1.6 342,666 + +0.2 342,666 + +0.9 342,666 + -0.1 342,666 + +2.9 342,666 + -1.1 342,666 + -1.1 342,666 + +1.6 342,666 + +1.5 342,666 + +1.2 342,666 + +2.5 342,666 + -0.0 342,666 + -0.5 342,666 + -1.1 342,667 - +0.3 342,667 - -1.1 342,667 - -0.1 342,667 - +1.3 342,667 - +0.5 342,667 - -0.7 342,667 - -0.1 342,667 - -1.1 342,675 - +0.5 342,696 - -0.9 342,799 + +1.2 342,886 + AO353_01615 0.51 -0.1 342,886 + AO353_01615 0.51 -0.1 342,886 + AO353_01615 0.51 -0.1 342,909 + AO353_01615 0.63 -0.4 342,909 + AO353_01615 0.63 -0.9 342,910 - AO353_01615 0.63 -1.3 342,910 - AO353_01615 0.63 -0.7 342,910 - AO353_01615 0.63 -0.7 342,910 - AO353_01615 0.63 -1.1 342,967 + -0.4 342,967 + -1.1 342,967 + +1.9 342,967 + -1.0 342,967 + +0.9 342,967 + -0.1 342,967 + -1.1 342,967 + +1.3 342,968 - -0.1 342,968 - -0.3 342,968 - -0.9 343,041 + -1.5 343,041 + +0.9 343,041 + +0.8 343,041 + +0.9 343,041 + +2.2 343,041 + +0.9 343,041 + -0.1 343,042 - +0.9 343,042 - -0.1 343,042 - -1.4 343,042 - -0.1 343,042 - +0.6 343,045 + +0.3 343,045 + +0.6 343,045 + +1.8 343,046 - -1.9 343,046 - -0.1 343,046 - +1.9 343,046 - -1.1 343,050 + +0.5 343,050 + +1.7 343,050 + +0.3 343,050 + -0.1 343,050 + +0.6 343,050 + +0.9 343,051 - +1.5 343,074 + +2.5 343,075 - +0.2 343,173 - +0.9 343,173 - +0.4 343,173 - -0.1 343,257 + -0.1 343,258 - -0.5 343,258 - +2.5 343,258 - +1.1 343,261 + -1.1 343,262 - +2.2 343,294 - +0.5 343,294 - +0.5 343,302 + +2.2 343,303 - -0.1 343,303 - +0.6 343,303 - -0.1 343,303 - +0.3 343,334 + -0.7 343,335 - +0.9 343,363 + -1.7 343,363 + +1.5 343,363 + -2.1 343,363 + +1.5 343,363 + -1.1 343,363 + +1.3 343,363 + +0.1 343,363 + -0.1 343,363 + -1.3 343,363 + -0.7 343,363 + +0.9 343,364 - +0.4 343,364 - -0.7 343,364 - -0.5 343,364 - +0.2 343,364 - -1.1 343,364 - -0.7 343,366 + -2.9 343,366 + +2.5 343,366 + -0.4 343,366 + +0.9 343,367 - -0.4 343,367 - -0.5 343,367 - +0.1 343,367 - -0.7 343,367 - +0.3 343,367 - +2.9 343,408 + -1.1 343,408 + +0.6 343,408 + +0.7 343,408 + +0.9 343,408 + -0.1 343,408 + +0.4 343,408 + +0.9 343,408 + +0.8 343,409 - -0.1 343,409 - +0.9 343,409 - -0.1 343,409 - -0.1 343,409 - -0.1 343,409 - -0.1 343,446 + +1.6 343,446 + +0.1 343,446 + +0.9 343,447 - -0.4 343,447 - +0.9 343,447 - +0.5 343,447 - +0.2 343,447 - -0.1 343,718 + AO353_01620 0.35 +1.3 343,718 + AO353_01620 0.35 -1.1 343,718 + AO353_01620 0.35 -0.2 343,718 + AO353_01620 0.35 -0.1 343,718 + AO353_01620 0.35 +0.9 343,719 - AO353_01620 0.35 -0.9 343,719 - AO353_01620 0.35 -0.5 343,719 - AO353_01620 0.35 +1.0 343,719 - AO353_01620 0.35 -0.5 343,719 - AO353_01620 0.35 +1.5 343,719 - AO353_01620 0.35 +0.9 343,719 - AO353_01620 0.35 -0.7 343,719 - AO353_01620 0.35 +0.7 343,719 - AO353_01620 0.35 +0.7 343,789 - AO353_01620 0.43 -2.1 343,789 - AO353_01620 0.43 +1.5 343,910 + AO353_01620 0.57 +1.5 343,910 + AO353_01620 0.57 +1.4 343,910 + AO353_01620 0.57 +0.5 343,911 - AO353_01620 0.57 +0.2 343,911 - AO353_01620 0.57 +3.0
Or see this region's nucleotide sequence