Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21405 and ABZR86_RS21410 overlap by 4 nucleotides ABZR86_RS21410 and ABZR86_RS21415 are separated by 223 nucleotides ABZR86_RS21415 and ABZR86_RS21420 are separated by 159 nucleotides
ABZR86_RS21405: ABZR86_RS21405 - biotin--protein ligase, at 247,825 to 248,115
_RS21405
ABZR86_RS21410: ABZR86_RS21410 - biotin/lipoate A/B protein ligase family protein, at 248,112 to 248,888
_RS21410
ABZR86_RS21415: ABZR86_RS21415 - hypothetical protein, at 249,112 to 249,600
_RS21415
ABZR86_RS21420: ABZR86_RS21420 - alpha/beta fold hydrolase, at 249,760 to 250,602
_RS21420
Position (kb) 249
250 Strain fitness (log2 ratio) -2
-1
0
1 at 248.403 kb on + strand, within ABZR86_RS21410 at 248.404 kb on - strand, within ABZR86_RS21410 at 248.412 kb on + strand, within ABZR86_RS21410 at 248.412 kb on + strand, within ABZR86_RS21410 at 248.413 kb on - strand, within ABZR86_RS21410 at 248.413 kb on - strand, within ABZR86_RS21410 at 248.413 kb on - strand, within ABZR86_RS21410 at 248.458 kb on - strand, within ABZR86_RS21410 at 248.458 kb on - strand, within ABZR86_RS21410 at 248.517 kb on + strand, within ABZR86_RS21410 at 248.575 kb on + strand, within ABZR86_RS21410 at 248.575 kb on + strand, within ABZR86_RS21410 at 248.575 kb on + strand, within ABZR86_RS21410 at 248.576 kb on - strand, within ABZR86_RS21410 at 248.617 kb on - strand, within ABZR86_RS21410 at 248.617 kb on - strand, within ABZR86_RS21410 at 248.886 kb on + strand at 248.911 kb on - strand at 248.911 kb on - strand at 248.997 kb on + strand at 248.997 kb on + strand at 248.997 kb on + strand at 248.998 kb on - strand at 248.998 kb on - strand at 249.061 kb on - strand at 249.085 kb on + strand at 249.303 kb on + strand, within ABZR86_RS21415 at 249.303 kb on + strand, within ABZR86_RS21415 at 249.341 kb on - strand, within ABZR86_RS21415 at 249.341 kb on - strand, within ABZR86_RS21415 at 249.341 kb on - strand, within ABZR86_RS21415 at 249.343 kb on + strand, within ABZR86_RS21415 at 249.343 kb on + strand, within ABZR86_RS21415 at 249.343 kb on + strand, within ABZR86_RS21415 at 249.344 kb on - strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.424 kb on + strand, within ABZR86_RS21415 at 249.425 kb on - strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.496 kb on + strand, within ABZR86_RS21415 at 249.497 kb on - strand, within ABZR86_RS21415 at 249.497 kb on - strand, within ABZR86_RS21415 at 249.497 kb on - strand, within ABZR86_RS21415 at 249.605 kb on + strand at 249.605 kb on + strand at 249.605 kb on + strand at 249.606 kb on - strand at 249.655 kb on + strand at 249.692 kb on + strand at 249.692 kb on + strand at 249.692 kb on + strand at 249.693 kb on - strand at 249.693 kb on - strand at 249.725 kb on - strand at 249.889 kb on + strand, within ABZR86_RS21420 at 249.890 kb on - strand, within ABZR86_RS21420 at 249.958 kb on + strand, within ABZR86_RS21420 at 250.096 kb on + strand, within ABZR86_RS21420 at 250.097 kb on - strand, within ABZR86_RS21420 at 250.138 kb on + strand, within ABZR86_RS21420 at 250.138 kb on + strand, within ABZR86_RS21420 at 250.139 kb on - strand, within ABZR86_RS21420 at 250.219 kb on + strand, within ABZR86_RS21420 at 250.330 kb on + strand, within ABZR86_RS21420 at 250.330 kb on + strand, within ABZR86_RS21420 at 250.331 kb on - strand, within ABZR86_RS21420 at 250.331 kb on - strand, within ABZR86_RS21420 at 250.489 kb on + strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420 at 250.490 kb on - strand, within ABZR86_RS21420
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 248,403 + ABZR86_RS21410 0.37 +0.2 248,404 - ABZR86_RS21410 0.38 +0.2 248,412 + ABZR86_RS21410 0.39 -0.3 248,412 + ABZR86_RS21410 0.39 +0.2 248,413 - ABZR86_RS21410 0.39 -0.0 248,413 - ABZR86_RS21410 0.39 -0.2 248,413 - ABZR86_RS21410 0.39 -0.7 248,458 - ABZR86_RS21410 0.45 -0.9 248,458 - ABZR86_RS21410 0.45 -2.1 248,517 + ABZR86_RS21410 0.52 -0.4 248,575 + ABZR86_RS21410 0.60 +0.1 248,575 + ABZR86_RS21410 0.60 -0.0 248,575 + ABZR86_RS21410 0.60 -0.3 248,576 - ABZR86_RS21410 0.60 -0.7 248,617 - ABZR86_RS21410 0.65 -1.0 248,617 - ABZR86_RS21410 0.65 -0.1 248,886 + -1.8 248,911 - +1.0 248,911 - +0.1 248,997 + +0.4 248,997 + +0.6 248,997 + +0.3 248,998 - +0.3 248,998 - -0.3 249,061 - -0.5 249,085 + +0.1 249,303 + ABZR86_RS21415 0.39 +0.4 249,303 + ABZR86_RS21415 0.39 -1.1 249,341 - ABZR86_RS21415 0.47 +0.0 249,341 - ABZR86_RS21415 0.47 -0.3 249,341 - ABZR86_RS21415 0.47 +0.7 249,343 + ABZR86_RS21415 0.47 -0.1 249,343 + ABZR86_RS21415 0.47 +0.4 249,343 + ABZR86_RS21415 0.47 +0.1 249,344 - ABZR86_RS21415 0.47 -0.5 249,424 + ABZR86_RS21415 0.64 +0.5 249,424 + ABZR86_RS21415 0.64 -0.2 249,424 + ABZR86_RS21415 0.64 +0.4 249,424 + ABZR86_RS21415 0.64 +0.1 249,424 + ABZR86_RS21415 0.64 -1.7 249,424 + ABZR86_RS21415 0.64 -0.5 249,425 - ABZR86_RS21415 0.64 +0.6 249,496 + ABZR86_RS21415 0.79 -0.8 249,496 + ABZR86_RS21415 0.79 +0.6 249,496 + ABZR86_RS21415 0.79 -0.4 249,496 + ABZR86_RS21415 0.79 -0.3 249,496 + ABZR86_RS21415 0.79 +0.5 249,496 + ABZR86_RS21415 0.79 +0.4 249,497 - ABZR86_RS21415 0.79 -0.4 249,497 - ABZR86_RS21415 0.79 -1.0 249,497 - ABZR86_RS21415 0.79 +0.7 249,605 + +1.1 249,605 + -0.3 249,605 + +0.8 249,606 - -0.2 249,655 + +0.4 249,692 + -0.4 249,692 + +0.0 249,692 + +0.1 249,693 - -0.7 249,693 - +0.3 249,725 - -0.1 249,889 + ABZR86_RS21420 0.15 -0.2 249,890 - ABZR86_RS21420 0.15 +0.6 249,958 + ABZR86_RS21420 0.23 +1.1 250,096 + ABZR86_RS21420 0.40 +0.1 250,097 - ABZR86_RS21420 0.40 +0.1 250,138 + ABZR86_RS21420 0.45 +0.7 250,138 + ABZR86_RS21420 0.45 +1.6 250,139 - ABZR86_RS21420 0.45 +0.3 250,219 + ABZR86_RS21420 0.54 -0.9 250,330 + ABZR86_RS21420 0.68 +0.7 250,330 + ABZR86_RS21420 0.68 +0.6 250,331 - ABZR86_RS21420 0.68 -0.2 250,331 - ABZR86_RS21420 0.68 -0.2 250,489 + ABZR86_RS21420 0.86 +0.4 250,490 - ABZR86_RS21420 0.87 +0.6 250,490 - ABZR86_RS21420 0.87 +0.1 250,490 - ABZR86_RS21420 0.87 +0.0 250,490 - ABZR86_RS21420 0.87 +0.5 250,490 - ABZR86_RS21420 0.87 +0.0
Or see this region's nucleotide sequence