Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21005 and ABZR86_RS21010 are separated by 172 nucleotides ABZR86_RS21010 and ABZR86_RS21015 are separated by 4 nucleotides ABZR86_RS21015 and ABZR86_RS21020 are separated by 118 nucleotides
ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575
_RS21005
ABZR86_RS21010: ABZR86_RS21010 - hypothetical protein, at 174,748 to 175,326
_RS21010
ABZR86_RS21015: ABZR86_RS21015 - SDR family oxidoreductase, at 175,331 to 176,134
_RS21015
ABZR86_RS21020: ABZR86_RS21020 - ATP-binding protein, at 176,253 to 177,569
_RS21020
Position (kb) 175
176
177 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 174.399 kb on + strand, within ABZR86_RS21005 at 174.400 kb on - strand, within ABZR86_RS21005 at 174.400 kb on - strand, within ABZR86_RS21005 at 174.450 kb on + strand, within ABZR86_RS21005 at 174.451 kb on - strand, within ABZR86_RS21005 at 174.603 kb on + strand at 174.776 kb on - strand at 174.776 kb on - strand at 174.835 kb on + strand, within ABZR86_RS21010 at 174.836 kb on - strand, within ABZR86_RS21010 at 174.997 kb on + strand, within ABZR86_RS21010 at 174.997 kb on + strand, within ABZR86_RS21010 at 175.142 kb on + strand, within ABZR86_RS21010 at 175.142 kb on + strand, within ABZR86_RS21010 at 175.143 kb on - strand, within ABZR86_RS21010 at 175.143 kb on - strand, within ABZR86_RS21010 at 175.176 kb on + strand, within ABZR86_RS21010 at 175.279 kb on + strand at 175.351 kb on - strand at 175.351 kb on - strand at 175.653 kb on + strand, within ABZR86_RS21015 at 175.653 kb on + strand, within ABZR86_RS21015 at 175.654 kb on - strand, within ABZR86_RS21015 at 175.671 kb on + strand, within ABZR86_RS21015 at 175.671 kb on + strand, within ABZR86_RS21015 at 175.717 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.767 kb on + strand, within ABZR86_RS21015 at 175.768 kb on - strand, within ABZR86_RS21015 at 175.955 kb on + strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 175.956 kb on - strand, within ABZR86_RS21015 at 176.071 kb on - strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.183 kb on + strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.184 kb on - strand at 176.402 kb on - strand, within ABZR86_RS21020 at 176.441 kb on + strand, within ABZR86_RS21020 at 176.522 kb on - strand, within ABZR86_RS21020 at 176.635 kb on + strand, within ABZR86_RS21020 at 176.635 kb on + strand, within ABZR86_RS21020 at 176.636 kb on - strand, within ABZR86_RS21020 at 176.717 kb on - strand, within ABZR86_RS21020
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 174,399 + ABZR86_RS21005 0.82 +0.5 174,400 - ABZR86_RS21005 0.82 +0.4 174,400 - ABZR86_RS21005 0.82 -0.2 174,450 + ABZR86_RS21005 0.87 +2.0 174,451 - ABZR86_RS21005 0.87 +0.1 174,603 + +0.1 174,776 - +0.4 174,776 - +0.8 174,835 + ABZR86_RS21010 0.15 -0.2 174,836 - ABZR86_RS21010 0.15 +0.8 174,997 + ABZR86_RS21010 0.43 +0.3 174,997 + ABZR86_RS21010 0.43 -0.2 175,142 + ABZR86_RS21010 0.68 +0.5 175,142 + ABZR86_RS21010 0.68 -0.5 175,143 - ABZR86_RS21010 0.68 -0.6 175,143 - ABZR86_RS21010 0.68 +0.2 175,176 + ABZR86_RS21010 0.74 +0.7 175,279 + +0.4 175,351 - +0.1 175,351 - +0.6 175,653 + ABZR86_RS21015 0.40 +0.4 175,653 + ABZR86_RS21015 0.40 +0.1 175,654 - ABZR86_RS21015 0.40 +0.4 175,671 + ABZR86_RS21015 0.42 +0.6 175,671 + ABZR86_RS21015 0.42 +0.6 175,717 + ABZR86_RS21015 0.48 +0.3 175,767 + ABZR86_RS21015 0.54 -0.4 175,767 + ABZR86_RS21015 0.54 +0.3 175,767 + ABZR86_RS21015 0.54 -0.8 175,768 - ABZR86_RS21015 0.54 -0.2 175,955 + ABZR86_RS21015 0.78 +0.2 175,956 - ABZR86_RS21015 0.78 +0.1 175,956 - ABZR86_RS21015 0.78 +0.9 175,956 - ABZR86_RS21015 0.78 +0.1 176,071 - -0.5 176,183 + -0.7 176,183 + -0.8 176,183 + +0.8 176,183 + +2.0 176,183 + +0.6 176,183 + +0.8 176,183 + -0.9 176,183 + +0.4 176,183 + -0.8 176,183 + -0.2 176,184 - +0.6 176,184 - +0.6 176,184 - +0.5 176,184 - -0.0 176,402 - ABZR86_RS21020 0.11 -2.9 176,441 + ABZR86_RS21020 0.14 -4.9 176,522 - ABZR86_RS21020 0.20 -3.1 176,635 + ABZR86_RS21020 0.29 -5.3 176,635 + ABZR86_RS21020 0.29 -1.9 176,636 - ABZR86_RS21020 0.29 -5.4 176,717 - ABZR86_RS21020 0.35 -3.8
Or see this region's nucleotide sequence