Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20485

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20475 and ABZR86_RS20480 overlap by 4 nucleotidesABZR86_RS20480 and ABZR86_RS20485 overlap by 8 nucleotidesABZR86_RS20485 and ABZR86_RS20490 overlap by 4 nucleotidesABZR86_RS20490 and ABZR86_RS20495 are separated by 1 nucleotides ABZR86_RS20475: ABZR86_RS20475 - FAD-dependent oxidoreductase, at 34,937 to 36,043 _RS20475 ABZR86_RS20480: ABZR86_RS20480 - (2Fe-2S)-binding protein, at 36,040 to 36,285 _RS20480 ABZR86_RS20485: ABZR86_RS20485 - FAD/NAD(P)-binding oxidoreductase, at 36,278 to 37,564 _RS20485 ABZR86_RS20490: ABZR86_RS20490 - dihydrodipicolinate synthase family protein, at 37,561 to 38,466 _RS20490 ABZR86_RS20495: ABZR86_RS20495 - aldehyde dehydrogenase family protein, at 38,468 to 40,069 _RS20495 Position (kb) 36 37 38Strain fitness (log2 ratio) -1 0 1 2at 35.432 kb on + strand, within ABZR86_RS20475at 35.432 kb on + strand, within ABZR86_RS20475at 35.432 kb on + strand, within ABZR86_RS20475at 35.433 kb on - strand, within ABZR86_RS20475at 35.433 kb on - strand, within ABZR86_RS20475at 37.891 kb on + strand, within ABZR86_RS20490at 37.892 kb on - strand, within ABZR86_RS20490at 37.892 kb on - strand, within ABZR86_RS20490at 37.897 kb on + strand, within ABZR86_RS20490at 37.972 kb on + strand, within ABZR86_RS20490at 37.972 kb on + strand, within ABZR86_RS20490at 37.973 kb on - strand, within ABZR86_RS20490

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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35,432 + ABZR86_RS20475 0.45 -0.0
35,432 + ABZR86_RS20475 0.45 +0.2
35,432 + ABZR86_RS20475 0.45 -0.4
35,433 - ABZR86_RS20475 0.45 -0.1
35,433 - ABZR86_RS20475 0.45 +0.3
37,891 + ABZR86_RS20490 0.36 +0.7
37,892 - ABZR86_RS20490 0.37 -0.4
37,892 - ABZR86_RS20490 0.37 +1.9
37,897 + ABZR86_RS20490 0.37 +0.1
37,972 + ABZR86_RS20490 0.45 +0.3
37,972 + ABZR86_RS20490 0.45 +0.9
37,973 - ABZR86_RS20490 0.45 -0.4

Or see this region's nucleotide sequence