Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS18285 and ABZR86_RS18290 are separated by 1 nucleotides ABZR86_RS18290 and ABZR86_RS18295 are separated by 76 nucleotides ABZR86_RS18295 and ABZR86_RS18300 are separated by 404 nucleotides
ABZR86_RS18285: ABZR86_RS18285 - efflux RND transporter permease subunit, at 73,924 to 77,067
_RS18285
ABZR86_RS18290: ABZR86_RS18290 - AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor, at 77,069 to 78,562
_RS18290
ABZR86_RS18295: ABZR86_RS18295 - MarR family transcriptional regulator, at 78,639 to 79,070
_RS18295
ABZR86_RS18300: ABZR86_RS18300 - lipase family protein, at 79,475 to 79,984
_RS18300
Position (kb) 77
78
79 Strain fitness (log2 ratio) -2
-1
0
1
2 at 76.189 kb on + strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.190 kb on - strand, within ABZR86_RS18285 at 76.285 kb on + strand, within ABZR86_RS18285 at 76.286 kb on - strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.549 kb on + strand, within ABZR86_RS18285 at 76.550 kb on - strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.551 kb on + strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.552 kb on - strand, within ABZR86_RS18285 at 76.697 kb on - strand, within ABZR86_RS18285 at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.069 kb on - strand at 77.145 kb on - strand at 77.465 kb on + strand, within ABZR86_RS18290 at 77.584 kb on + strand, within ABZR86_RS18290 at 77.615 kb on + strand, within ABZR86_RS18290 at 77.616 kb on - strand, within ABZR86_RS18290 at 77.682 kb on - strand, within ABZR86_RS18290 at 77.688 kb on - strand, within ABZR86_RS18290 at 77.790 kb on - strand, within ABZR86_RS18290 at 77.791 kb on + strand, within ABZR86_RS18290 at 77.792 kb on - strand, within ABZR86_RS18290 at 78.322 kb on + strand, within ABZR86_RS18290 at 78.323 kb on - strand, within ABZR86_RS18290 at 78.327 kb on - strand, within ABZR86_RS18290 at 78.368 kb on + strand, within ABZR86_RS18290 at 78.369 kb on - strand, within ABZR86_RS18290 at 78.402 kb on - strand, within ABZR86_RS18290 at 78.464 kb on + strand at 78.465 kb on - strand at 78.553 kb on - strand at 78.679 kb on + strand at 78.679 kb on + strand at 78.679 kb on + strand at 78.680 kb on - strand at 78.758 kb on + strand, within ABZR86_RS18295 at 78.759 kb on - strand, within ABZR86_RS18295 at 78.986 kb on + strand, within ABZR86_RS18295 at 78.987 kb on - strand, within ABZR86_RS18295 at 79.277 kb on + strand at 79.277 kb on + strand at 79.277 kb on + strand at 79.278 kb on - strand at 79.363 kb on - strand at 79.484 kb on + strand at 79.485 kb on - strand at 79.485 kb on - strand at 79.529 kb on - strand, within ABZR86_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 76,189 + ABZR86_RS18285 0.72 +0.6 76,190 - ABZR86_RS18285 0.72 -0.2 76,190 - ABZR86_RS18285 0.72 +0.5 76,190 - ABZR86_RS18285 0.72 -0.1 76,285 + ABZR86_RS18285 0.75 -0.1 76,286 - ABZR86_RS18285 0.75 +0.5 76,549 + ABZR86_RS18285 0.83 -1.6 76,549 + ABZR86_RS18285 0.83 +0.3 76,549 + ABZR86_RS18285 0.83 +0.4 76,550 - ABZR86_RS18285 0.84 +0.6 76,551 + ABZR86_RS18285 0.84 +1.1 76,551 + ABZR86_RS18285 0.84 -0.1 76,551 + ABZR86_RS18285 0.84 +0.3 76,552 - ABZR86_RS18285 0.84 -0.3 76,552 - ABZR86_RS18285 0.84 +0.6 76,552 - ABZR86_RS18285 0.84 +0.9 76,552 - ABZR86_RS18285 0.84 -0.2 76,697 - ABZR86_RS18285 0.88 -0.4 77,069 - +0.1 77,069 - -0.5 77,069 - -1.2 77,069 - +0.2 77,069 - +0.2 77,145 - -2.4 77,465 + ABZR86_RS18290 0.27 -0.1 77,584 + ABZR86_RS18290 0.34 +0.5 77,615 + ABZR86_RS18290 0.37 -0.5 77,616 - ABZR86_RS18290 0.37 +0.1 77,682 - ABZR86_RS18290 0.41 -1.3 77,688 - ABZR86_RS18290 0.41 -0.7 77,790 - ABZR86_RS18290 0.48 -0.5 77,791 + ABZR86_RS18290 0.48 -0.0 77,792 - ABZR86_RS18290 0.48 -1.4 78,322 + ABZR86_RS18290 0.84 -0.1 78,323 - ABZR86_RS18290 0.84 -0.3 78,327 - ABZR86_RS18290 0.84 +0.1 78,368 + ABZR86_RS18290 0.87 -0.4 78,369 - ABZR86_RS18290 0.87 +0.4 78,402 - ABZR86_RS18290 0.89 +0.2 78,464 + -0.3 78,465 - +1.1 78,553 - +0.0 78,679 + +0.2 78,679 + +0.1 78,679 + +0.7 78,680 - -0.7 78,758 + ABZR86_RS18295 0.28 -0.7 78,759 - ABZR86_RS18295 0.28 +0.6 78,986 + ABZR86_RS18295 0.80 -0.0 78,987 - ABZR86_RS18295 0.81 +0.7 79,277 + +1.1 79,277 + -0.4 79,277 + -0.8 79,278 - +2.1 79,363 - +0.4 79,484 + -0.5 79,485 - -0.1 79,485 - +0.2 79,529 - ABZR86_RS18300 0.11 -0.3
Or see this region's nucleotide sequence