Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05315 and ABZR86_RS05320 are separated by 207 nucleotides ABZR86_RS05320 and ABZR86_RS05325 are separated by 24 nucleotides ABZR86_RS05325 and ABZR86_RS05330 overlap by 4 nucleotides ABZR86_RS05330 and ABZR86_RS05335 are separated by 275 nucleotides ABZR86_RS05335 and ABZR86_RS05340 are separated by 195 nucleotides
ABZR86_RS05315: ABZR86_RS05315 - alpha/beta fold hydrolase, at 1,195,889 to 1,197,178
_RS05315
ABZR86_RS05320: ABZR86_RS05320 - hypothetical protein, at 1,197,386 to 1,197,574
_RS05320
ABZR86_RS05325: ABZR86_RS05325 - ferritin-like domain-containing protein, at 1,197,599 to 1,198,108
_RS05325
ABZR86_RS05330: ABZR86_RS05330 - AarF/UbiB family protein, at 1,198,105 to 1,199,748
_RS05330
ABZR86_RS05335: ABZR86_RS05335 - hemerythrin domain-containing protein, at 1,200,024 to 1,200,515
_RS05335
ABZR86_RS05340: ABZR86_RS05340 - HAD family hydrolase, at 1,200,711 to 1,201,427
_RS05340
Position (kb) 1198
1199
1200 Strain fitness (log2 ratio) -1
0
1
2 at 1197.604 kb on + strand at 1197.704 kb on + strand, within ABZR86_RS05325 at 1197.705 kb on - strand, within ABZR86_RS05325 at 1197.902 kb on + strand, within ABZR86_RS05325 at 1197.903 kb on - strand, within ABZR86_RS05325 at 1197.903 kb on - strand, within ABZR86_RS05325 at 1197.978 kb on + strand, within ABZR86_RS05325 at 1197.978 kb on + strand, within ABZR86_RS05325 at 1198.064 kb on + strand at 1198.065 kb on - strand at 1198.215 kb on - strand at 1198.215 kb on - strand at 1198.215 kb on - strand at 1198.700 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.973 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.369 kb on - strand, within ABZR86_RS05330 at 1199.699 kb on + strand at 1199.741 kb on + strand at 1199.742 kb on - strand at 1199.742 kb on - strand at 1199.742 kb on - strand at 1200.231 kb on + strand, within ABZR86_RS05335 at 1200.231 kb on + strand, within ABZR86_RS05335
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 1,197,604 + -0.7 1,197,704 + ABZR86_RS05325 0.21 -0.6 1,197,705 - ABZR86_RS05325 0.21 -0.0 1,197,902 + ABZR86_RS05325 0.59 -0.6 1,197,903 - ABZR86_RS05325 0.60 -0.6 1,197,903 - ABZR86_RS05325 0.60 -0.5 1,197,978 + ABZR86_RS05325 0.74 +0.8 1,197,978 + ABZR86_RS05325 0.74 +0.5 1,198,064 + +0.2 1,198,065 - +0.2 1,198,215 - +0.5 1,198,215 - +1.2 1,198,215 - -0.8 1,198,700 + ABZR86_RS05330 0.36 -1.3 1,198,708 + ABZR86_RS05330 0.37 -0.6 1,198,708 + ABZR86_RS05330 0.37 -0.5 1,198,708 + ABZR86_RS05330 0.37 -0.1 1,198,709 - ABZR86_RS05330 0.37 +0.3 1,198,709 - ABZR86_RS05330 0.37 -0.5 1,198,709 - ABZR86_RS05330 0.37 -0.8 1,198,973 + ABZR86_RS05330 0.53 -0.3 1,199,114 + ABZR86_RS05330 0.61 +0.3 1,199,114 + ABZR86_RS05330 0.61 +0.6 1,199,114 + ABZR86_RS05330 0.61 +0.7 1,199,114 + ABZR86_RS05330 0.61 -0.6 1,199,114 + ABZR86_RS05330 0.61 +0.1 1,199,114 + ABZR86_RS05330 0.61 +2.2 1,199,114 + ABZR86_RS05330 0.61 -1.2 1,199,114 + ABZR86_RS05330 0.61 -1.6 1,199,114 + ABZR86_RS05330 0.61 -0.3 1,199,114 + ABZR86_RS05330 0.61 +0.6 1,199,115 - ABZR86_RS05330 0.61 -0.3 1,199,115 - ABZR86_RS05330 0.61 +0.5 1,199,115 - ABZR86_RS05330 0.61 -0.0 1,199,115 - ABZR86_RS05330 0.61 +0.1 1,199,115 - ABZR86_RS05330 0.61 +0.4 1,199,369 - ABZR86_RS05330 0.77 -0.0 1,199,699 + -0.1 1,199,741 + +0.3 1,199,742 - -0.1 1,199,742 - +1.5 1,199,742 - -0.1 1,200,231 + ABZR86_RS05335 0.42 +0.3 1,200,231 + ABZR86_RS05335 0.42 +0.6
Or see this region's nucleotide sequence