Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04220 and ABZR86_RS04225 are separated by 92 nucleotides ABZR86_RS04225 and ABZR86_RS04230 are separated by 512 nucleotides
ABZR86_RS04220: ABZR86_RS04220 - amino acid adenylation domain-containing protein, at 947,181 to 950,255
_RS04220
ABZR86_RS04225: ABZR86_RS04225 - MbtH family protein, at 950,348 to 950,566
_RS04225
ABZR86_RS04230: ABZR86_RS04230 - amidohydrolase family protein, at 951,079 to 952,584
_RS04230
Position (kb) 950
951 Strain fitness (log2 ratio) -2
-1
0
1 at 949.721 kb on + strand, within ABZR86_RS04220 at 949.721 kb on + strand, within ABZR86_RS04220 at 949.722 kb on - strand, within ABZR86_RS04220 at 949.723 kb on + strand, within ABZR86_RS04220 at 949.723 kb on + strand, within ABZR86_RS04220 at 949.724 kb on - strand, within ABZR86_RS04220 at 949.724 kb on - strand, within ABZR86_RS04220 at 949.724 kb on - strand, within ABZR86_RS04220 at 949.724 kb on - strand, within ABZR86_RS04220 at 949.724 kb on - strand, within ABZR86_RS04220 at 949.732 kb on + strand, within ABZR86_RS04220 at 949.732 kb on + strand, within ABZR86_RS04220 at 949.733 kb on - strand, within ABZR86_RS04220 at 949.733 kb on - strand, within ABZR86_RS04220 at 949.733 kb on - strand, within ABZR86_RS04220 at 949.831 kb on + strand, within ABZR86_RS04220 at 949.831 kb on + strand, within ABZR86_RS04220 at 949.912 kb on + strand, within ABZR86_RS04220 at 949.912 kb on + strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.913 kb on - strand, within ABZR86_RS04220 at 949.933 kb on + strand, within ABZR86_RS04220 at 949.934 kb on - strand, within ABZR86_RS04220 at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 949.955 kb on - strand at 950.019 kb on + strand at 950.019 kb on + strand at 950.019 kb on + strand at 950.020 kb on - strand at 950.020 kb on - strand at 950.020 kb on - strand at 950.020 kb on - strand at 950.021 kb on + strand at 950.021 kb on + strand at 950.030 kb on + strand at 950.031 kb on - strand at 950.101 kb on + strand at 950.227 kb on + strand at 950.227 kb on + strand at 950.227 kb on + strand at 950.228 kb on - strand at 950.349 kb on + strand at 950.395 kb on + strand, within ABZR86_RS04225 at 950.395 kb on + strand, within ABZR86_RS04225 at 950.395 kb on + strand, within ABZR86_RS04225 at 950.396 kb on - strand, within ABZR86_RS04225 at 950.407 kb on + strand, within ABZR86_RS04225 at 950.407 kb on + strand, within ABZR86_RS04225 at 950.408 kb on - strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.418 kb on + strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.419 kb on - strand, within ABZR86_RS04225 at 950.617 kb on + strand at 950.617 kb on + strand at 950.719 kb on - strand at 950.740 kb on + strand at 950.741 kb on - strand at 950.743 kb on + strand at 950.743 kb on + strand at 950.743 kb on + strand at 950.743 kb on + strand at 950.743 kb on + strand at 950.744 kb on - strand at 950.744 kb on - strand at 950.744 kb on - strand at 950.765 kb on + strand at 950.765 kb on + strand at 950.766 kb on - strand at 950.826 kb on + strand at 950.826 kb on + strand at 950.826 kb on + strand at 950.826 kb on + strand at 950.827 kb on - strand at 950.878 kb on + strand at 950.911 kb on - strand at 950.911 kb on - strand at 950.962 kb on + strand at 950.963 kb on - strand at 951.090 kb on + strand at 951.090 kb on + strand at 951.090 kb on + strand at 951.090 kb on + strand at 951.093 kb on + strand at 951.093 kb on + strand at 951.093 kb on + strand at 951.093 kb on + strand at 951.094 kb on - strand at 951.094 kb on - strand at 951.147 kb on + strand at 951.184 kb on + strand at 951.185 kb on - strand at 951.409 kb on + strand, within ABZR86_RS04230 at 951.475 kb on + strand, within ABZR86_RS04230 at 951.475 kb on + strand, within ABZR86_RS04230 at 951.476 kb on - strand, within ABZR86_RS04230 at 951.498 kb on + strand, within ABZR86_RS04230 at 951.499 kb on - strand, within ABZR86_RS04230 at 951.499 kb on - strand, within ABZR86_RS04230 at 951.499 kb on - strand, within ABZR86_RS04230 at 951.504 kb on + strand, within ABZR86_RS04230 at 951.505 kb on - strand, within ABZR86_RS04230 at 951.515 kb on + strand, within ABZR86_RS04230 at 951.516 kb on - strand, within ABZR86_RS04230 at 951.516 kb on - strand, within ABZR86_RS04230 at 951.516 kb on - strand, within ABZR86_RS04230 at 951.516 kb on - strand, within ABZR86_RS04230
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 949,721 + ABZR86_RS04220 0.83 -0.1 949,721 + ABZR86_RS04220 0.83 +0.3 949,722 - ABZR86_RS04220 0.83 -0.4 949,723 + ABZR86_RS04220 0.83 -0.2 949,723 + ABZR86_RS04220 0.83 +0.4 949,724 - ABZR86_RS04220 0.83 -0.1 949,724 - ABZR86_RS04220 0.83 -0.6 949,724 - ABZR86_RS04220 0.83 -0.4 949,724 - ABZR86_RS04220 0.83 +0.6 949,724 - ABZR86_RS04220 0.83 -0.0 949,732 + ABZR86_RS04220 0.83 +0.2 949,732 + ABZR86_RS04220 0.83 +0.0 949,733 - ABZR86_RS04220 0.83 -0.1 949,733 - ABZR86_RS04220 0.83 -0.4 949,733 - ABZR86_RS04220 0.83 +0.5 949,831 + ABZR86_RS04220 0.86 -0.4 949,831 + ABZR86_RS04220 0.86 -0.5 949,912 + ABZR86_RS04220 0.89 +0.2 949,912 + ABZR86_RS04220 0.89 +0.2 949,913 - ABZR86_RS04220 0.89 -0.1 949,913 - ABZR86_RS04220 0.89 -0.0 949,913 - ABZR86_RS04220 0.89 +0.2 949,913 - ABZR86_RS04220 0.89 +0.6 949,913 - ABZR86_RS04220 0.89 +0.3 949,913 - ABZR86_RS04220 0.89 +0.1 949,933 + ABZR86_RS04220 0.89 -0.2 949,934 - ABZR86_RS04220 0.90 -0.2 949,955 - +0.2 949,955 - -0.7 949,955 - -0.9 949,955 - -0.7 950,019 + -0.8 950,019 + +0.1 950,019 + -0.4 950,020 - -0.3 950,020 - +0.1 950,020 - -0.1 950,020 - -0.6 950,021 + -0.3 950,021 + -0.5 950,030 + -0.8 950,031 - +0.2 950,101 + -0.1 950,227 + +0.3 950,227 + -0.3 950,227 + -0.3 950,228 - +0.8 950,349 + -0.5 950,395 + ABZR86_RS04225 0.21 -0.9 950,395 + ABZR86_RS04225 0.21 -0.3 950,395 + ABZR86_RS04225 0.21 -0.1 950,396 - ABZR86_RS04225 0.22 +0.6 950,407 + ABZR86_RS04225 0.27 -1.2 950,407 + ABZR86_RS04225 0.27 -0.3 950,408 - ABZR86_RS04225 0.27 +0.3 950,418 + ABZR86_RS04225 0.32 +0.6 950,418 + ABZR86_RS04225 0.32 +0.4 950,418 + ABZR86_RS04225 0.32 -1.1 950,418 + ABZR86_RS04225 0.32 +1.3 950,418 + ABZR86_RS04225 0.32 +0.3 950,418 + ABZR86_RS04225 0.32 +0.9 950,418 + ABZR86_RS04225 0.32 +0.3 950,418 + ABZR86_RS04225 0.32 +0.6 950,419 - ABZR86_RS04225 0.32 +0.2 950,419 - ABZR86_RS04225 0.32 +0.9 950,419 - ABZR86_RS04225 0.32 +0.2 950,419 - ABZR86_RS04225 0.32 +0.4 950,419 - ABZR86_RS04225 0.32 +0.8 950,419 - ABZR86_RS04225 0.32 -1.8 950,419 - ABZR86_RS04225 0.32 -0.9 950,617 + -0.1 950,617 + +0.8 950,719 - -0.6 950,740 + +0.1 950,741 - +0.9 950,743 + -0.2 950,743 + +0.2 950,743 + +0.1 950,743 + +0.1 950,743 + +0.4 950,744 - -0.0 950,744 - +0.2 950,744 - -0.5 950,765 + -0.1 950,765 + -0.1 950,766 - -0.1 950,826 + -0.0 950,826 + -1.0 950,826 + -0.0 950,826 + +0.7 950,827 - -0.2 950,878 + -0.3 950,911 - +1.0 950,911 - -0.5 950,962 + +1.3 950,963 - +0.5 951,090 + +0.7 951,090 + -0.0 951,090 + +1.3 951,090 + -0.1 951,093 + -0.1 951,093 + -0.5 951,093 + +0.6 951,093 + +0.6 951,094 - +0.9 951,094 - +0.0 951,147 + -0.3 951,184 + +0.8 951,185 - +0.3 951,409 + ABZR86_RS04230 0.22 -0.9 951,475 + ABZR86_RS04230 0.26 -0.0 951,475 + ABZR86_RS04230 0.26 -0.0 951,476 - ABZR86_RS04230 0.26 -0.0 951,498 + ABZR86_RS04230 0.28 -0.1 951,499 - ABZR86_RS04230 0.28 -0.2 951,499 - ABZR86_RS04230 0.28 -1.1 951,499 - ABZR86_RS04230 0.28 +0.2 951,504 + ABZR86_RS04230 0.28 -0.9 951,505 - ABZR86_RS04230 0.28 +0.1 951,515 + ABZR86_RS04230 0.29 -0.4 951,516 - ABZR86_RS04230 0.29 -0.1 951,516 - ABZR86_RS04230 0.29 -0.3 951,516 - ABZR86_RS04230 0.29 -0.4 951,516 - ABZR86_RS04230 0.29 +0.3
Or see this region's nucleotide sequence