Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00775 and ABZR86_RS00780 are separated by 294 nucleotides ABZR86_RS00780 and ABZR86_RS00785 are separated by 125 nucleotides ABZR86_RS00785 and ABZR86_RS00790 are separated by 34 nucleotides ABZR86_RS00790 and ABZR86_RS00795 are separated by 85 nucleotides
ABZR86_RS00775: ABZR86_RS00775 - peroxiredoxin, at 152,527 to 152,988
_RS00775
ABZR86_RS00780: ABZR86_RS00780 - glycine cleavage system protein R, at 153,283 to 153,837
_RS00780
ABZR86_RS00785: ABZR86_RS00785 - 4-hydroxy-tetrahydrodipicolinate synthase, at 153,963 to 154,856
_RS00785
ABZR86_RS00790: ABZR86_RS00790 - hypothetical protein, at 154,891 to 155,487
_RS00790
ABZR86_RS00795: ABZR86_RS00795 - ferredoxin FdxA, at 155,573 to 155,896
_RS00795
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1
2 at 153.141 kb on - strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.434 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.581 kb on + strand, within ABZR86_RS00780 at 153.581 kb on + strand, within ABZR86_RS00780 at 153.582 kb on - strand, within ABZR86_RS00780 at 153.582 kb on - strand, within ABZR86_RS00780 at 153.819 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.901 kb on - strand at 153.927 kb on + strand at 153.928 kb on - strand at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.252 kb on - strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 153,141 - -0.3 153,284 + -0.5 153,284 + +0.7 153,284 + -0.6 153,284 + +0.4 153,284 + +0.3 153,284 + +0.4 153,284 + -0.3 153,285 - +0.3 153,285 - -0.3 153,285 - -0.0 153,285 - -0.4 153,285 - +1.9 153,285 - -0.3 153,434 + ABZR86_RS00780 0.27 +0.9 153,539 + ABZR86_RS00780 0.46 +0.1 153,539 + ABZR86_RS00780 0.46 -0.5 153,539 + ABZR86_RS00780 0.46 +0.3 153,581 + ABZR86_RS00780 0.54 +0.3 153,581 + ABZR86_RS00780 0.54 +0.7 153,582 - ABZR86_RS00780 0.54 -0.2 153,582 - ABZR86_RS00780 0.54 +0.6 153,819 + -0.2 153,900 + -0.8 153,900 + +0.7 153,900 + +1.5 153,900 + -0.4 153,900 + +0.2 153,900 + +0.8 153,900 + -0.6 153,901 - +1.2 153,927 + +0.2 153,928 - -0.3 155,251 + ABZR86_RS00790 0.60 -0.9 155,251 + ABZR86_RS00790 0.60 +0.1 155,251 + ABZR86_RS00790 0.60 +0.6 155,251 + ABZR86_RS00790 0.60 +0.1 155,252 - ABZR86_RS00790 0.60 +0.2 155,253 + ABZR86_RS00790 0.61 +0.5 155,253 + ABZR86_RS00790 0.61 -0.2 155,253 + ABZR86_RS00790 0.61 -1.0 155,253 + ABZR86_RS00790 0.61 +0.3 155,254 - ABZR86_RS00790 0.61 -0.5 155,254 - ABZR86_RS00790 0.61 -0.4
Or see this region's nucleotide sequence