Experiment: a-Cyclodextrin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00580 and ABZR86_RS00585 are separated by 97 nucleotides ABZR86_RS00585 and ABZR86_RS00590 are separated by 130 nucleotides ABZR86_RS00590 and ABZR86_RS00595 are separated by 91 nucleotides
ABZR86_RS00580: ABZR86_RS00580 - protease HtpX, at 109,610 to 110,500
_RS00580
ABZR86_RS00585: ABZR86_RS00585 - molecular chaperone HtpG, at 110,598 to 112,460
_RS00585
ABZR86_RS00590: ABZR86_RS00590 - hypothetical protein, at 112,591 to 113,148
_RS00590
ABZR86_RS00595: ABZR86_RS00595 - NAD(P)/FAD-dependent oxidoreductase, at 113,240 to 114,382
_RS00595
Position (kb) 110
111
112
113 Strain fitness (log2 ratio) -1
0
1
2 at 109.636 kb on + strand at 109.636 kb on + strand at 109.636 kb on + strand at 109.637 kb on - strand at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 110.110 kb on + strand, within ABZR86_RS00580 at 110.111 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.550 kb on + strand at 110.550 kb on + strand at 110.551 kb on - strand at 110.551 kb on - strand at 110.668 kb on - strand at 110.976 kb on + strand, within ABZR86_RS00585 at 111.192 kb on + strand, within ABZR86_RS00585 at 111.324 kb on + strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.544 kb on - strand, within ABZR86_RS00585 at 111.544 kb on - strand, within ABZR86_RS00585 at 111.717 kb on + strand, within ABZR86_RS00585 at 111.718 kb on - strand, within ABZR86_RS00585 at 111.718 kb on - strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.849 kb on + strand, within ABZR86_RS00585 at 111.850 kb on - strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.888 kb on + strand, within ABZR86_RS00585 at 111.889 kb on - strand, within ABZR86_RS00585 at 111.889 kb on - strand, within ABZR86_RS00585 at 112.017 kb on + strand, within ABZR86_RS00585 at 112.018 kb on - strand, within ABZR86_RS00585 at 112.168 kb on + strand, within ABZR86_RS00585 at 112.168 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.215 kb on + strand, within ABZR86_RS00585 at 112.216 kb on - strand, within ABZR86_RS00585 at 112.481 kb on - strand at 112.481 kb on - strand at 112.481 kb on - strand at 112.481 kb on - strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.526 kb on + strand at 112.527 kb on - strand at 112.527 kb on - strand at 112.527 kb on - strand at 112.718 kb on + strand, within ABZR86_RS00590 at 112.727 kb on + strand, within ABZR86_RS00590 at 112.727 kb on + strand, within ABZR86_RS00590 at 112.728 kb on - strand, within ABZR86_RS00590 at 112.728 kb on - strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.731 kb on + strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.732 kb on - strand, within ABZR86_RS00590 at 112.826 kb on + strand, within ABZR86_RS00590 at 112.826 kb on + strand, within ABZR86_RS00590 at 112.827 kb on - strand, within ABZR86_RS00590 at 112.827 kb on - strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.844 kb on + strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590 at 112.845 kb on - strand, within ABZR86_RS00590
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin (C) remove 109,636 + -0.5 109,636 + +0.4 109,636 + -1.1 109,637 - -0.2 109,743 - ABZR86_RS00580 0.15 -0.2 109,743 - ABZR86_RS00580 0.15 -0.5 109,743 - ABZR86_RS00580 0.15 -0.2 109,743 - ABZR86_RS00580 0.15 +0.7 109,926 - ABZR86_RS00580 0.35 +0.1 109,926 - ABZR86_RS00580 0.35 +0.5 110,110 + ABZR86_RS00580 0.56 -0.3 110,111 - ABZR86_RS00580 0.56 -0.3 110,205 - ABZR86_RS00580 0.67 +0.3 110,205 - ABZR86_RS00580 0.67 +0.5 110,550 + -0.7 110,550 + +1.3 110,551 - -0.0 110,551 - +0.5 110,668 - -0.2 110,976 + ABZR86_RS00585 0.20 +0.1 111,192 + ABZR86_RS00585 0.32 -0.6 111,324 + ABZR86_RS00585 0.39 -0.1 111,325 - ABZR86_RS00585 0.39 +0.1 111,325 - ABZR86_RS00585 0.39 +0.1 111,336 + ABZR86_RS00585 0.40 -0.1 111,336 + ABZR86_RS00585 0.40 -0.4 111,336 + ABZR86_RS00585 0.40 +0.1 111,423 + ABZR86_RS00585 0.44 +0.1 111,423 + ABZR86_RS00585 0.44 -0.8 111,423 + ABZR86_RS00585 0.44 -0.0 111,423 + ABZR86_RS00585 0.44 +0.6 111,423 + ABZR86_RS00585 0.44 +0.3 111,424 - ABZR86_RS00585 0.44 -0.3 111,424 - ABZR86_RS00585 0.44 +0.4 111,424 - ABZR86_RS00585 0.44 -0.0 111,424 - ABZR86_RS00585 0.44 +1.0 111,424 - ABZR86_RS00585 0.44 -0.5 111,424 - ABZR86_RS00585 0.44 +0.7 111,424 - ABZR86_RS00585 0.44 -0.3 111,492 + ABZR86_RS00585 0.48 +0.0 111,492 + ABZR86_RS00585 0.48 +0.6 111,492 + ABZR86_RS00585 0.48 +0.2 111,492 + ABZR86_RS00585 0.48 -0.7 111,492 + ABZR86_RS00585 0.48 -0.1 111,492 + ABZR86_RS00585 0.48 -0.3 111,492 + ABZR86_RS00585 0.48 -0.4 111,493 - ABZR86_RS00585 0.48 -0.5 111,493 - ABZR86_RS00585 0.48 -0.6 111,493 - ABZR86_RS00585 0.48 -0.3 111,544 - ABZR86_RS00585 0.51 +0.1 111,544 - ABZR86_RS00585 0.51 +0.2 111,717 + ABZR86_RS00585 0.60 -0.8 111,718 - ABZR86_RS00585 0.60 +0.6 111,718 - ABZR86_RS00585 0.60 -0.2 111,849 + ABZR86_RS00585 0.67 -0.2 111,849 + ABZR86_RS00585 0.67 -0.3 111,849 + ABZR86_RS00585 0.67 +1.1 111,849 + ABZR86_RS00585 0.67 -0.3 111,849 + ABZR86_RS00585 0.67 -1.0 111,849 + ABZR86_RS00585 0.67 -1.0 111,849 + ABZR86_RS00585 0.67 +0.1 111,850 - ABZR86_RS00585 0.67 -0.8 111,888 + ABZR86_RS00585 0.69 +0.4 111,888 + ABZR86_RS00585 0.69 +0.1 111,888 + ABZR86_RS00585 0.69 +0.2 111,888 + ABZR86_RS00585 0.69 +2.3 111,889 - ABZR86_RS00585 0.69 -0.0 111,889 - ABZR86_RS00585 0.69 +0.6 112,017 + ABZR86_RS00585 0.76 -0.5 112,018 - ABZR86_RS00585 0.76 -0.3 112,168 + ABZR86_RS00585 0.84 +1.4 112,168 + ABZR86_RS00585 0.84 +0.2 112,215 + ABZR86_RS00585 0.87 +0.4 112,215 + ABZR86_RS00585 0.87 +0.1 112,215 + ABZR86_RS00585 0.87 +0.1 112,215 + ABZR86_RS00585 0.87 +1.0 112,216 - ABZR86_RS00585 0.87 -0.5 112,481 - -0.0 112,481 - +0.6 112,481 - +0.2 112,481 - -0.2 112,526 + +0.2 112,526 + +0.0 112,526 + -0.5 112,526 + -0.6 112,527 - -0.7 112,527 - -0.5 112,527 - +0.5 112,718 + ABZR86_RS00590 0.23 -0.5 112,727 + ABZR86_RS00590 0.24 -1.1 112,727 + ABZR86_RS00590 0.24 -0.9 112,728 - ABZR86_RS00590 0.25 -0.1 112,728 - ABZR86_RS00590 0.25 +0.2 112,731 + ABZR86_RS00590 0.25 +0.7 112,731 + ABZR86_RS00590 0.25 -0.4 112,731 + ABZR86_RS00590 0.25 +0.6 112,731 + ABZR86_RS00590 0.25 -0.2 112,731 + ABZR86_RS00590 0.25 -0.3 112,731 + ABZR86_RS00590 0.25 -0.0 112,731 + ABZR86_RS00590 0.25 +0.3 112,731 + ABZR86_RS00590 0.25 -0.2 112,731 + ABZR86_RS00590 0.25 -0.4 112,731 + ABZR86_RS00590 0.25 +0.5 112,732 - ABZR86_RS00590 0.25 -0.0 112,732 - ABZR86_RS00590 0.25 +0.5 112,732 - ABZR86_RS00590 0.25 -0.0 112,732 - ABZR86_RS00590 0.25 +0.4 112,732 - ABZR86_RS00590 0.25 -0.3 112,732 - ABZR86_RS00590 0.25 -0.2 112,732 - ABZR86_RS00590 0.25 -0.0 112,826 + ABZR86_RS00590 0.42 -0.2 112,826 + ABZR86_RS00590 0.42 +0.9 112,827 - ABZR86_RS00590 0.42 +0.4 112,827 - ABZR86_RS00590 0.42 -0.1 112,844 + ABZR86_RS00590 0.45 +1.0 112,844 + ABZR86_RS00590 0.45 +0.7 112,844 + ABZR86_RS00590 0.45 +0.6 112,845 - ABZR86_RS00590 0.46 -0.0 112,845 - ABZR86_RS00590 0.46 +0.2 112,845 - ABZR86_RS00590 0.46 -0.6 112,845 - ABZR86_RS00590 0.46 -0.3
Or see this region's nucleotide sequence