Experiment: MoYLS4 with Sisomicin 0.0078 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0065 and DvMF_R0066 are separated by 105 nucleotides DvMF_R0066 and DvMF_2240 are separated by 356 nucleotides DvMF_2240 and DvMF_2241 are separated by 553 nucleotides
DvMF_R0065: DvMF_R0065 - 23S ribosomal RNA (RefSeq), at 2,808,725 to 2,811,650
_R0065
DvMF_R0066: DvMF_R0066 - 5S ribosomal RNA (RefSeq), at 2,811,756 to 2,811,870
_R0066
DvMF_2240: DvMF_2240 - hypothetical protein (RefSeq), at 2,812,227 to 2,813,327
_2240
DvMF_2241: DvMF_2241 - benzoate transporter (RefSeq), at 2,813,881 to 2,815,104
_2241
Position (kb)
2812
2813
2814 Strain fitness (log2 ratio)
-1
0
1 at 2812.070 kb on - strand at 2812.150 kb on + strand at 2812.453 kb on + strand, within DvMF_2240 at 2812.453 kb on + strand, within DvMF_2240 at 2812.461 kb on - strand, within DvMF_2240 at 2812.550 kb on + strand, within DvMF_2240 at 2812.735 kb on + strand, within DvMF_2240 at 2812.919 kb on + strand, within DvMF_2240 at 2813.112 kb on - strand, within DvMF_2240 at 2813.112 kb on - strand, within DvMF_2240 at 2813.241 kb on - strand at 2813.297 kb on + strand at 2813.337 kb on - strand at 2813.517 kb on + strand at 2813.565 kb on + strand at 2813.630 kb on + strand at 2813.729 kb on + strand at 2813.864 kb on + strand at 2813.919 kb on - strand at 2814.068 kb on + strand, within DvMF_2241 at 2814.076 kb on - strand, within DvMF_2241 at 2814.153 kb on + strand, within DvMF_2241 at 2814.210 kb on - strand, within DvMF_2241 at 2814.326 kb on - strand, within DvMF_2241
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0078 mg/ml remove 2,812,070 - -0.6 2,812,150 + -0.5 2,812,453 + DvMF_2240 0.21 -0.3 2,812,453 + DvMF_2240 0.21 -0.4 2,812,461 - DvMF_2240 0.21 -0.5 2,812,550 + DvMF_2240 0.29 -1.0 2,812,735 + DvMF_2240 0.46 -1.4 2,812,919 + DvMF_2240 0.63 -0.4 2,813,112 - DvMF_2240 0.80 -0.4 2,813,112 - DvMF_2240 0.80 -0.6 2,813,241 - +0.3 2,813,297 + -0.7 2,813,337 - -0.0 2,813,517 + -0.3 2,813,565 + -0.4 2,813,630 + -0.5 2,813,729 + +0.1 2,813,864 + -1.0 2,813,919 - -0.3 2,814,068 + DvMF_2241 0.15 -0.0 2,814,076 - DvMF_2241 0.16 -0.3 2,814,153 + DvMF_2241 0.22 -1.4 2,814,210 - DvMF_2241 0.27 -0.3 2,814,326 - DvMF_2241 0.36 -0.0
Or see this region's nucleotide sequence