Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4135 and Shewana3_4136 are separated by 70 nucleotides Shewana3_4136 and Shewana3_4137 are separated by 12 nucleotides Shewana3_4137 and Shewana3_4138 are separated by 225 nucleotides
Shewana3_4135: Shewana3_4135 - F0F1 ATP synthase subunit C (RefSeq), at 4,968,754 to 4,969,005
_4135
Shewana3_4136: Shewana3_4136 - F0F1 ATP synthase subunit A (RefSeq), at 4,969,076 to 4,969,870
_4136
Shewana3_4137: Shewana3_4137 - ATP synthase I chain (RefSeq), at 4,969,883 to 4,970,266
_4137
Shewana3_4138: Shewana3_4138 - chromosome segregation DNA-binding protein (RefSeq), at 4,970,492 to 4,971,370
_4138
Position (kb) 4969
4970
4971 Strain fitness (log2 ratio) -2
-1
0
1 at 4970.609 kb on - strand, within Shewana3_4138 at 4970.617 kb on + strand, within Shewana3_4138 at 4970.625 kb on - strand, within Shewana3_4138 at 4970.720 kb on - strand, within Shewana3_4138 at 4970.789 kb on + strand, within Shewana3_4138 at 4970.797 kb on - strand, within Shewana3_4138 at 4970.822 kb on - strand, within Shewana3_4138 at 4970.828 kb on - strand, within Shewana3_4138
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 4,970,609 - Shewana3_4138 0.13 -2.7 4,970,617 + Shewana3_4138 0.14 +0.0 4,970,625 - Shewana3_4138 0.15 -0.6 4,970,720 - Shewana3_4138 0.26 -0.4 4,970,789 + Shewana3_4138 0.34 +0.2 4,970,797 - Shewana3_4138 0.35 -0.6 4,970,822 - Shewana3_4138 0.38 -1.2 4,970,828 - Shewana3_4138 0.38 -1.0
Or see this region's nucleotide sequence