Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3926 and Shewana3_3927 are separated by 115 nucleotides Shewana3_3927 and Shewana3_3928 are separated by 28 nucleotides Shewana3_3928 and Shewana3_3929 are separated by 57 nucleotides
Shewana3_3926: Shewana3_3926 - coproporphyrinogen III oxidase (RefSeq), at 4,719,399 to 4,720,736
_3926
Shewana3_3927: Shewana3_3927 - hypothetical protein (RefSeq), at 4,720,852 to 4,721,085
_3927
Shewana3_3928: Shewana3_3928 - hypothetical protein (RefSeq), at 4,721,114 to 4,722,052
_3928
Shewana3_3929: Shewana3_3929 - enterobactin receptor protein (RefSeq), at 4,722,110 to 4,724,101
_3929
Position (kb)
4721
4722
4723 Strain fitness (log2 ratio)
-2
-1
0
1 at 4720.159 kb on + strand, within Shewana3_3926 at 4720.169 kb on - strand, within Shewana3_3926 at 4720.217 kb on - strand, within Shewana3_3926 at 4720.338 kb on - strand, within Shewana3_3926 at 4720.561 kb on - strand, within Shewana3_3926 at 4720.887 kb on - strand, within Shewana3_3927 at 4721.060 kb on + strand, within Shewana3_3927 at 4721.161 kb on - strand at 4721.161 kb on - strand at 4721.174 kb on - strand at 4721.198 kb on - strand at 4721.372 kb on + strand, within Shewana3_3928 at 4721.375 kb on - strand, within Shewana3_3928 at 4721.434 kb on - strand, within Shewana3_3928 at 4721.571 kb on + strand, within Shewana3_3928 at 4721.579 kb on - strand, within Shewana3_3928 at 4721.603 kb on - strand, within Shewana3_3928 at 4721.603 kb on - strand, within Shewana3_3928 at 4721.667 kb on + strand, within Shewana3_3928 at 4721.667 kb on + strand, within Shewana3_3928 at 4721.667 kb on + strand, within Shewana3_3928 at 4721.667 kb on + strand, within Shewana3_3928 at 4721.675 kb on - strand, within Shewana3_3928 at 4721.675 kb on - strand, within Shewana3_3928 at 4721.705 kb on + strand, within Shewana3_3928 at 4721.815 kb on - strand, within Shewana3_3928 at 4721.973 kb on + strand at 4721.981 kb on - strand at 4721.981 kb on - strand at 4722.008 kb on - strand at 4722.122 kb on + strand at 4722.130 kb on - strand at 4722.135 kb on - strand at 4722.225 kb on - strand at 4722.440 kb on + strand, within Shewana3_3929 at 4722.456 kb on + strand, within Shewana3_3929 at 4722.462 kb on + strand, within Shewana3_3929 at 4722.464 kb on - strand, within Shewana3_3929 at 4722.520 kb on - strand, within Shewana3_3929 at 4722.562 kb on + strand, within Shewana3_3929 at 4722.567 kb on + strand, within Shewana3_3929 at 4722.570 kb on - strand, within Shewana3_3929 at 4722.570 kb on - strand, within Shewana3_3929 at 4722.570 kb on - strand, within Shewana3_3929 at 4722.647 kb on + strand, within Shewana3_3929 at 4722.696 kb on - strand, within Shewana3_3929 at 4722.919 kb on + strand, within Shewana3_3929 at 4722.927 kb on - strand, within Shewana3_3929 at 4722.927 kb on - strand, within Shewana3_3929
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 4,720,159 + Shewana3_3926 0.57 +0.1 4,720,169 - Shewana3_3926 0.58 +0.3 4,720,217 - Shewana3_3926 0.61 -0.9 4,720,338 - Shewana3_3926 0.70 +0.3 4,720,561 - Shewana3_3926 0.87 +0.6 4,720,887 - Shewana3_3927 0.15 +0.2 4,721,060 + Shewana3_3927 0.89 -0.8 4,721,161 - +0.4 4,721,161 - -0.4 4,721,174 - -0.5 4,721,198 - -0.6 4,721,372 + Shewana3_3928 0.27 -0.4 4,721,375 - Shewana3_3928 0.28 -1.5 4,721,434 - Shewana3_3928 0.34 +0.6 4,721,571 + Shewana3_3928 0.49 -0.1 4,721,579 - Shewana3_3928 0.50 -0.1 4,721,603 - Shewana3_3928 0.52 -0.8 4,721,603 - Shewana3_3928 0.52 -2.0 4,721,667 + Shewana3_3928 0.59 -0.7 4,721,667 + Shewana3_3928 0.59 -0.2 4,721,667 + Shewana3_3928 0.59 -0.0 4,721,667 + Shewana3_3928 0.59 -0.8 4,721,675 - Shewana3_3928 0.60 +0.4 4,721,675 - Shewana3_3928 0.60 +0.1 4,721,705 + Shewana3_3928 0.63 +0.0 4,721,815 - Shewana3_3928 0.75 +0.4 4,721,973 + -0.2 4,721,981 - -0.3 4,721,981 - +0.3 4,722,008 - -0.3 4,722,122 + +0.4 4,722,130 - -0.1 4,722,135 - +0.1 4,722,225 - -2.4 4,722,440 + Shewana3_3929 0.17 +0.1 4,722,456 + Shewana3_3929 0.17 +0.2 4,722,462 + Shewana3_3929 0.18 +0.3 4,722,464 - Shewana3_3929 0.18 +0.4 4,722,520 - Shewana3_3929 0.21 -1.7 4,722,562 + Shewana3_3929 0.23 +0.3 4,722,567 + Shewana3_3929 0.23 +0.6 4,722,570 - Shewana3_3929 0.23 -1.0 4,722,570 - Shewana3_3929 0.23 -0.2 4,722,570 - Shewana3_3929 0.23 +0.3 4,722,647 + Shewana3_3929 0.27 -0.6 4,722,696 - Shewana3_3929 0.29 +0.1 4,722,919 + Shewana3_3929 0.41 -1.3 4,722,927 - Shewana3_3929 0.41 -0.3 4,722,927 - Shewana3_3929 0.41 +0.2
Or see this region's nucleotide sequence