Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2142 and Shewana3_2143 are separated by 101 nucleotides Shewana3_2143 and Shewana3_2144 are separated by 269 nucleotides Shewana3_2144 and Shewana3_2145 are separated by 740 nucleotides
Shewana3_2142: Shewana3_2142 - integrase catalytic subunit (RefSeq), at 2,566,187 to 2,566,909
_2142
Shewana3_2143: Shewana3_2143 - response regulator receiver protein (RefSeq), at 2,567,011 to 2,567,403
_2143
Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055
_2144
Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010
_2145
Position (kb)
2567
2568
2569
2570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2567.441 kb on + strand at 2567.441 kb on + strand at 2567.735 kb on - strand at 2567.735 kb on - strand at 2567.749 kb on - strand at 2568.158 kb on - strand, within Shewana3_2144 at 2568.336 kb on + strand, within Shewana3_2144 at 2568.344 kb on - strand, within Shewana3_2144 at 2568.458 kb on - strand, within Shewana3_2144 at 2568.566 kb on - strand, within Shewana3_2144 at 2568.645 kb on - strand, within Shewana3_2144 at 2569.551 kb on - strand at 2570.020 kb on - strand, within Shewana3_2145
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 2,567,441 + -0.2 2,567,441 + -0.1 2,567,735 - -0.6 2,567,735 - -0.4 2,567,749 - -1.9 2,568,158 - Shewana3_2144 0.35 +0.6 2,568,336 + Shewana3_2144 0.48 -0.3 2,568,344 - Shewana3_2144 0.49 +2.1 2,568,458 - Shewana3_2144 0.57 +0.5 2,568,566 - Shewana3_2144 0.65 +1.5 2,568,645 - Shewana3_2144 0.70 +0.5 2,569,551 - -0.1 2,570,020 - Shewana3_2145 0.18 -0.0
Or see this region's nucleotide sequence