Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2144

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2142 and Shewana3_2143 are separated by 101 nucleotidesShewana3_2143 and Shewana3_2144 are separated by 269 nucleotidesShewana3_2144 and Shewana3_2145 are separated by 740 nucleotides Shewana3_2142: Shewana3_2142 - integrase catalytic subunit (RefSeq), at 2,566,187 to 2,566,909 _2142 Shewana3_2143: Shewana3_2143 - response regulator receiver protein (RefSeq), at 2,567,011 to 2,567,403 _2143 Shewana3_2144: Shewana3_2144 - Na+/H+ antiporter NhaC (RefSeq), at 2,567,673 to 2,569,055 _2144 Shewana3_2145: Shewana3_2145 - aminotransferase AlaT (RefSeq), at 2,569,796 to 2,571,010 _2145 Position (kb) 2567 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1 2at 2567.441 kb on + strandat 2567.441 kb on + strandat 2567.735 kb on - strandat 2567.735 kb on - strandat 2567.749 kb on - strandat 2568.158 kb on - strand, within Shewana3_2144at 2568.336 kb on + strand, within Shewana3_2144at 2568.344 kb on - strand, within Shewana3_2144at 2568.458 kb on - strand, within Shewana3_2144at 2568.566 kb on - strand, within Shewana3_2144at 2568.645 kb on - strand, within Shewana3_2144at 2569.551 kb on - strandat 2570.020 kb on - strand, within Shewana3_2145

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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2,567,441 + -0.2
2,567,441 + -0.1
2,567,735 - -0.6
2,567,735 - -0.4
2,567,749 - -1.9
2,568,158 - Shewana3_2144 0.35 +0.6
2,568,336 + Shewana3_2144 0.48 -0.3
2,568,344 - Shewana3_2144 0.49 +2.1
2,568,458 - Shewana3_2144 0.57 +0.5
2,568,566 - Shewana3_2144 0.65 +1.5
2,568,645 - Shewana3_2144 0.70 +0.5
2,569,551 - -0.1
2,570,020 - Shewana3_2145 0.18 -0.0

Or see this region's nucleotide sequence