Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1769

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1767 and Shewana3_1768 are separated by 6 nucleotidesShewana3_1768 and Shewana3_1769 are separated by 352 nucleotidesShewana3_1769 and yebU are separated by 297 nucleotides Shewana3_1767: Shewana3_1767 - DNA polymerase III, delta prime subunit (RefSeq), at 2,080,896 to 2,081,852 _1767 Shewana3_1768: Shewana3_1768 - type IV pilus biogenesis protein pilZ (RefSeq), at 2,081,859 to 2,082,185 _1768 Shewana3_1769: Shewana3_1769 - TatD family hydrolase (RefSeq), at 2,082,538 to 2,083,338 _1769 Shewana3_1770: yebU - rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq), at 2,083,636 to 2,085,168 yebU Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -1 0 1at 2081.887 kb on + strandat 2082.021 kb on - strand, within Shewana3_1768at 2082.056 kb on + strand, within Shewana3_1768at 2082.165 kb on + strandat 2082.180 kb on + strandat 2082.180 kb on + strandat 2082.188 kb on - strandat 2082.382 kb on + strandat 2082.464 kb on - strandat 2082.608 kb on + strandat 2082.608 kb on + strandat 2082.767 kb on + strand, within Shewana3_1769at 2083.180 kb on + strand, within Shewana3_1769at 2083.276 kb on + strandat 2083.926 kb on + strand, within yebU

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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2,081,887 + -0.2
2,082,021 - Shewana3_1768 0.50 +0.1
2,082,056 + Shewana3_1768 0.60 +0.9
2,082,165 + -0.3
2,082,180 + +0.1
2,082,180 + +0.7
2,082,188 - +0.7
2,082,382 + +0.7
2,082,464 - -1.2
2,082,608 + +0.1
2,082,608 + -0.1
2,082,767 + Shewana3_1769 0.29 +0.7
2,083,180 + Shewana3_1769 0.80 +0.6
2,083,276 + +0.5
2,083,926 + yebU Shewana3_1770 0.19 -0.1

Or see this region's nucleotide sequence