Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1704 and gltA are separated by 286 nucleotides gltA and Shewana3_1706 are separated by 416 nucleotides Shewana3_1706 and Shewana3_1707 overlap by 7 nucleotides
Shewana3_1704: Shewana3_1704 - RND family efflux transporter MFP subunit (RefSeq), at 2,006,161 to 2,007,225
_1704
Shewana3_1705: gltA - type II citrate synthase (RefSeq), at 2,007,512 to 2,008,798
gltA
Shewana3_1706: Shewana3_1706 - succinate dehydrogenase subunit C (RefSeq), at 2,009,215 to 2,009,610
_1706
Shewana3_1707: Shewana3_1707 - succinate dehydrogenase subunit D (RefSeq), at 2,009,604 to 2,009,951
_1707
Position (kb)
2007
2008
2009 Strain fitness (log2 ratio)
-2
-1
0
1 at 2006.586 kb on - strand, within Shewana3_1704 at 2007.172 kb on + strand at 2007.555 kb on + strand at 2007.667 kb on - strand, within gltA at 2008.014 kb on - strand, within gltA at 2008.220 kb on + strand, within gltA at 2008.794 kb on + strand at 2008.826 kb on - strand at 2008.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 2,006,586 - Shewana3_1704 0.40 -0.3 2,007,172 + +0.1 2,007,555 + -0.9 2,007,667 - gltA Shewana3_1705 0.12 -2.3 2,008,014 - gltA Shewana3_1705 0.39 -1.3 2,008,220 + gltA Shewana3_1705 0.55 -0.7 2,008,794 + -0.3 2,008,826 - -0.9 2,008,917 + +0.4
Or see this region's nucleotide sequence