Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0855 and Shewana3_0856 are separated by 74 nucleotides Shewana3_0856 and Shewana3_0857 overlap by 8 nucleotides
Shewana3_0855: Shewana3_0855 - sulfite reductase (NADPH) alpha subunit (RefSeq), at 993,365 to 995,179
_0855
Shewana3_0856: Shewana3_0856 - sulfite reductase subunit beta (RefSeq), at 995,254 to 996,951
_0856
Shewana3_0857: Shewana3_0857 - phosphoadenosine phosphosulfate reductase (RefSeq), at 996,944 to 997,741
_0857
Position (kb) 995
996
997 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.255 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.347 kb on - strand, within Shewana3_0855 at 994.355 kb on + strand, within Shewana3_0855 at 994.391 kb on - strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.474 kb on + strand, within Shewana3_0855 at 994.482 kb on - strand, within Shewana3_0855 at 994.533 kb on - strand, within Shewana3_0855 at 994.564 kb on + strand, within Shewana3_0855 at 994.695 kb on - strand, within Shewana3_0855 at 994.870 kb on + strand, within Shewana3_0855 at 994.969 kb on - strand, within Shewana3_0855 at 994.985 kb on + strand, within Shewana3_0855 at 994.986 kb on + strand, within Shewana3_0855 at 995.055 kb on - strand at 995.087 kb on + strand at 995.148 kb on + strand at 995.286 kb on + strand at 995.462 kb on + strand, within Shewana3_0856 at 995.496 kb on + strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.504 kb on - strand, within Shewana3_0856 at 995.583 kb on - strand, within Shewana3_0856 at 995.722 kb on - strand, within Shewana3_0856 at 995.788 kb on - strand, within Shewana3_0856 at 995.825 kb on - strand, within Shewana3_0856 at 996.024 kb on + strand, within Shewana3_0856 at 996.146 kb on - strand, within Shewana3_0856 at 996.189 kb on + strand, within Shewana3_0856 at 996.210 kb on - strand, within Shewana3_0856 at 996.237 kb on + strand, within Shewana3_0856 at 996.287 kb on - strand, within Shewana3_0856 at 996.287 kb on - strand, within Shewana3_0856 at 996.340 kb on + strand, within Shewana3_0856 at 996.500 kb on + strand, within Shewana3_0856 at 996.500 kb on + strand, within Shewana3_0856 at 996.513 kb on - strand, within Shewana3_0856 at 996.538 kb on + strand, within Shewana3_0856 at 996.651 kb on - strand, within Shewana3_0856 at 996.745 kb on - strand, within Shewana3_0856 at 997.303 kb on + strand, within Shewana3_0857 at 997.303 kb on + strand, within Shewana3_0857 at 997.571 kb on + strand, within Shewana3_0857
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 994,255 - Shewana3_0855 0.49 -2.0 994,255 - Shewana3_0855 0.49 -1.6 994,255 - Shewana3_0855 0.49 -3.5 994,347 - Shewana3_0855 0.54 -0.5 994,347 - Shewana3_0855 0.54 -1.6 994,355 + Shewana3_0855 0.55 -2.0 994,391 - Shewana3_0855 0.57 -2.1 994,474 + Shewana3_0855 0.61 -1.3 994,474 + Shewana3_0855 0.61 -2.6 994,482 - Shewana3_0855 0.62 -2.3 994,533 - Shewana3_0855 0.64 -1.5 994,564 + Shewana3_0855 0.66 -1.6 994,695 - Shewana3_0855 0.73 -4.5 994,870 + Shewana3_0855 0.83 -2.2 994,969 - Shewana3_0855 0.88 -2.0 994,985 + Shewana3_0855 0.89 -2.0 994,986 + Shewana3_0855 0.89 -2.0 995,055 - -3.1 995,087 + -3.1 995,148 + -2.3 995,286 + -1.6 995,462 + Shewana3_0856 0.12 -3.1 995,496 + Shewana3_0856 0.14 -1.8 995,504 - Shewana3_0856 0.15 -3.1 995,504 - Shewana3_0856 0.15 -2.6 995,583 - Shewana3_0856 0.19 -2.7 995,722 - Shewana3_0856 0.28 -2.8 995,788 - Shewana3_0856 0.31 -3.9 995,825 - Shewana3_0856 0.34 -3.3 996,024 + Shewana3_0856 0.45 -5.0 996,146 - Shewana3_0856 0.53 -2.6 996,189 + Shewana3_0856 0.55 -3.4 996,210 - Shewana3_0856 0.56 -2.8 996,237 + Shewana3_0856 0.58 -0.6 996,287 - Shewana3_0856 0.61 -2.8 996,287 - Shewana3_0856 0.61 -2.5 996,340 + Shewana3_0856 0.64 -2.0 996,500 + Shewana3_0856 0.73 -3.8 996,500 + Shewana3_0856 0.73 -5.5 996,513 - Shewana3_0856 0.74 -3.0 996,538 + Shewana3_0856 0.76 -0.7 996,651 - Shewana3_0856 0.82 -3.3 996,745 - Shewana3_0856 0.88 -2.1 997,303 + Shewana3_0857 0.45 -3.1 997,303 + Shewana3_0857 0.45 -3.5 997,571 + Shewana3_0857 0.79 -3.3
Or see this region's nucleotide sequence