Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0783 and Shewana3_0784 are separated by 151 nucleotides Shewana3_0784 and Shewana3_0785 are separated by 69 nucleotides Shewana3_0785 and Shewana3_0786 are separated by 33 nucleotides Shewana3_0786 and Shewana3_0787 are separated by 184 nucleotides
Shewana3_0783: Shewana3_0783 - major facilitator transporter (RefSeq), at 904,676 to 906,067
_0783
Shewana3_0784: Shewana3_0784 - hypothetical protein (RefSeq), at 906,219 to 906,539
_0784
Shewana3_0785: Shewana3_0785 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 906,609 to 907,196
_0785
Shewana3_0786: Shewana3_0786 - hypothetical protein (RefSeq), at 907,230 to 907,808
_0786
Shewana3_0787: Shewana3_0787 - OmpA-like transmembrane domain-containing protein (RefSeq), at 907,993 to 908,496
_0787
Position (kb) 906
907
908 Strain fitness (log2 ratio) -1
0
1 at 905.759 kb on - strand, within Shewana3_0783 at 905.872 kb on - strand, within Shewana3_0783 at 906.207 kb on - strand at 906.212 kb on + strand at 906.217 kb on + strand at 906.217 kb on + strand at 906.230 kb on + strand at 906.302 kb on + strand, within Shewana3_0784 at 906.578 kb on + strand at 906.586 kb on - strand at 906.752 kb on - strand, within Shewana3_0785 at 906.946 kb on - strand, within Shewana3_0785 at 907.166 kb on + strand at 907.406 kb on - strand, within Shewana3_0786 at 907.670 kb on + strand, within Shewana3_0786 at 907.893 kb on + strand at 907.901 kb on - strand at 907.916 kb on - strand at 907.985 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 907.990 kb on + strand at 908.196 kb on + strand, within Shewana3_0787
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 905,759 - Shewana3_0783 0.78 -0.1 905,872 - Shewana3_0783 0.86 -1.1 906,207 - -0.2 906,212 + -0.2 906,217 + -0.5 906,217 + +0.6 906,230 + -0.3 906,302 + Shewana3_0784 0.26 -0.4 906,578 + -0.3 906,586 - -0.9 906,752 - Shewana3_0785 0.24 +0.6 906,946 - Shewana3_0785 0.57 +0.7 907,166 + -0.1 907,406 - Shewana3_0786 0.30 -0.5 907,670 + Shewana3_0786 0.76 +0.1 907,893 + +0.4 907,901 - -0.4 907,916 - +0.0 907,985 + +0.0 907,990 + -0.0 907,990 + -0.4 907,990 + -0.1 908,196 + Shewana3_0787 0.40 +0.5
Or see this region's nucleotide sequence