Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0614 and Shewana3_0615 overlap by 4 nucleotides Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides Shewana3_0616 and Shewana3_0617 are separated by 82 nucleotides
Shewana3_0614: Shewana3_0614 - ATPase domain-containing protein (RefSeq), at 719,821 to 721,149
_0614
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Shewana3_0617: Shewana3_0617 - cAMP-regulatory protein (RefSeq), at 722,231 to 722,866
_0617
Position (kb) 721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 720.150 kb on + strand, within Shewana3_0614 at 720.374 kb on + strand, within Shewana3_0614 at 720.498 kb on - strand, within Shewana3_0614 at 720.531 kb on + strand, within Shewana3_0614 at 720.539 kb on - strand, within Shewana3_0614 at 720.729 kb on + strand, within Shewana3_0614 at 720.965 kb on - strand, within Shewana3_0614 at 721.116 kb on + strand at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616 at 722.231 kb on - strand at 722.711 kb on - strand, within Shewana3_0617
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 720,150 + Shewana3_0614 0.25 -0.6 720,374 + Shewana3_0614 0.42 -0.4 720,498 - Shewana3_0614 0.51 +0.4 720,531 + Shewana3_0614 0.53 -0.1 720,539 - Shewana3_0614 0.54 +0.3 720,729 + Shewana3_0614 0.68 +0.4 720,965 - Shewana3_0614 0.86 +0.1 721,116 + -0.4 721,231 - Shewana3_0615 0.13 +0.2 721,341 - Shewana3_0615 0.29 -0.7 721,436 - Shewana3_0615 0.43 -0.2 721,544 + Shewana3_0615 0.59 -3.0 721,559 - Shewana3_0615 0.61 +0.1 721,661 + Shewana3_0615 0.76 -0.1 721,683 + Shewana3_0615 0.80 -0.6 721,839 + Shewana3_0616 0.11 -0.0 721,852 - Shewana3_0616 0.15 +0.2 722,045 + Shewana3_0616 0.70 +0.4 722,231 - -0.3 722,711 - Shewana3_0617 0.75 -0.7
Or see this region's nucleotide sequence