Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0508 and Shewana3_0509 are separated by 86 nucleotides Shewana3_0509 and Shewana3_0510 are separated by 27 nucleotides Shewana3_0510 and Shewana3_0511 are separated by 33 nucleotides Shewana3_0511 and Shewana3_0512 are separated by 101 nucleotides
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708
_0509
Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191
_0510
Shewana3_0511: Shewana3_0511 - 3-dehydroquinate dehydratase (RefSeq), at 602,225 to 602,659
_0511
Shewana3_0512: Shewana3_0512 - peptidyl-tRNA hydrolase domain protein (RefSeq), at 602,761 to 603,174
_0512
Position (kb) 601
602
603 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 600.753 kb on - strand, within Shewana3_0508 at 600.759 kb on + strand, within Shewana3_0508 at 600.760 kb on + strand, within Shewana3_0508 at 600.768 kb on - strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.787 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.836 kb on + strand at 600.845 kb on - strand at 600.889 kb on + strand at 601.128 kb on + strand, within Shewana3_0509 at 601.193 kb on - strand, within Shewana3_0509 at 601.308 kb on + strand, within Shewana3_0509 at 601.338 kb on - strand, within Shewana3_0509 at 601.426 kb on + strand, within Shewana3_0509 at 601.469 kb on + strand, within Shewana3_0509 at 601.521 kb on + strand, within Shewana3_0509 at 601.686 kb on - strand at 601.878 kb on - strand, within Shewana3_0510 at 601.904 kb on + strand, within Shewana3_0510 at 601.956 kb on + strand, within Shewana3_0510 at 601.964 kb on - strand, within Shewana3_0510 at 601.992 kb on + strand, within Shewana3_0510 at 602.010 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.023 kb on + strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.031 kb on - strand, within Shewana3_0510 at 602.048 kb on - strand, within Shewana3_0510 at 602.059 kb on - strand, within Shewana3_0510 at 602.270 kb on + strand, within Shewana3_0511 at 602.278 kb on - strand, within Shewana3_0511 at 602.423 kb on - strand, within Shewana3_0511 at 602.434 kb on - strand, within Shewana3_0511 at 602.488 kb on + strand, within Shewana3_0511 at 602.576 kb on + strand, within Shewana3_0511 at 602.584 kb on - strand, within Shewana3_0511 at 602.768 kb on + strand at 602.768 kb on + strand at 602.776 kb on - strand at 602.821 kb on + strand, within Shewana3_0512 at 602.836 kb on + strand, within Shewana3_0512 at 602.931 kb on + strand, within Shewana3_0512 at 602.939 kb on - strand, within Shewana3_0512
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 600,753 - Shewana3_0508 0.84 +0.2 600,759 + Shewana3_0508 0.85 +0.4 600,760 + Shewana3_0508 0.85 +0.0 600,768 - Shewana3_0508 0.85 +0.7 600,784 + Shewana3_0508 0.87 -0.2 600,784 + Shewana3_0508 0.87 +1.0 600,787 - Shewana3_0508 0.87 -0.0 600,792 - Shewana3_0508 0.87 -0.4 600,792 - Shewana3_0508 0.87 -0.4 600,836 + +0.3 600,845 - -0.4 600,889 + +0.2 601,128 + Shewana3_0509 0.14 +0.3 601,193 - Shewana3_0509 0.24 -0.1 601,308 + Shewana3_0509 0.41 +0.6 601,338 - Shewana3_0509 0.45 +0.9 601,426 + Shewana3_0509 0.58 +0.4 601,469 + Shewana3_0509 0.65 +0.3 601,521 + Shewana3_0509 0.72 +0.4 601,686 - +0.5 601,878 - Shewana3_0510 0.31 -0.2 601,904 + Shewana3_0510 0.37 -0.1 601,956 + Shewana3_0510 0.48 +0.7 601,964 - Shewana3_0510 0.50 -0.9 601,992 + Shewana3_0510 0.56 -0.3 602,010 + Shewana3_0510 0.60 +0.3 602,023 + Shewana3_0510 0.63 -0.4 602,023 + Shewana3_0510 0.63 +0.4 602,031 - Shewana3_0510 0.65 +0.4 602,031 - Shewana3_0510 0.65 +0.9 602,048 - Shewana3_0510 0.68 +0.0 602,059 - Shewana3_0510 0.71 -4.2 602,270 + Shewana3_0511 0.10 -2.2 602,278 - Shewana3_0511 0.12 -3.0 602,423 - Shewana3_0511 0.46 -4.2 602,434 - Shewana3_0511 0.48 -5.9 602,488 + Shewana3_0511 0.60 -3.5 602,576 + Shewana3_0511 0.81 -5.2 602,584 - Shewana3_0511 0.83 -4.2 602,768 + -0.4 602,768 + -0.7 602,776 - +0.3 602,821 + Shewana3_0512 0.14 -0.2 602,836 + Shewana3_0512 0.18 +0.2 602,931 + Shewana3_0512 0.41 -0.4 602,939 - Shewana3_0512 0.43 -0.2
Or see this region's nucleotide sequence