Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0161

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0159 and Shewana3_0160 are separated by 1 nucleotidesShewana3_0160 and Shewana3_0161 are separated by 14 nucleotidesShewana3_0161 and Shewana3_0162 are separated by 63 nucleotidesShewana3_0162 and Shewana3_0163 are separated by 105 nucleotides Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312 _0159 Shewana3_0160: Shewana3_0160 - general secretion pathway M protein (RefSeq), at 184,314 to 184,790 _0160 Shewana3_0161: Shewana3_0161 - type II secretion system protein N (RefSeq), at 184,805 to 185,566 _0161 Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292 _0162 Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012 _0163 Position (kb) 184 185 186Strain fitness (log2 ratio) -1 0 1 2 3at 183.805 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.893 kb on + strand, within Shewana3_0159at 183.901 kb on - strand, within Shewana3_0159at 183.921 kb on - strand, within Shewana3_0159at 183.964 kb on + strand, within Shewana3_0159at 184.020 kb on - strand, within Shewana3_0159at 184.049 kb on + strand, within Shewana3_0159at 184.057 kb on - strand, within Shewana3_0159at 184.057 kb on - strand, within Shewana3_0159at 184.107 kb on + strand, within Shewana3_0159at 184.107 kb on + strand, within Shewana3_0159at 184.115 kb on - strand, within Shewana3_0159at 184.115 kb on - strand, within Shewana3_0159at 184.467 kb on - strand, within Shewana3_0160at 184.472 kb on + strand, within Shewana3_0160at 184.472 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.558 kb on + strand, within Shewana3_0160at 184.566 kb on - strand, within Shewana3_0160at 184.576 kb on + strand, within Shewana3_0160at 184.627 kb on - strand, within Shewana3_0160at 184.723 kb on + strand, within Shewana3_0160at 184.947 kb on - strand, within Shewana3_0161at 185.077 kb on - strand, within Shewana3_0161at 185.108 kb on + strand, within Shewana3_0161at 185.146 kb on + strand, within Shewana3_0161at 185.174 kb on - strand, within Shewana3_0161at 185.375 kb on - strand, within Shewana3_0161at 185.490 kb on - strandat 185.529 kb on + strandat 185.890 kb on + strand, within Shewana3_0162at 185.923 kb on + strand, within Shewana3_0162at 185.937 kb on + strand, within Shewana3_0162at 185.937 kb on + strand, within Shewana3_0162at 185.945 kb on - strand, within Shewana3_0162at 186.049 kb on - strand, within Shewana3_0162at 186.122 kb on - strand, within Shewana3_0162at 186.171 kb on - strand, within Shewana3_0162at 186.171 kb on - strand, within Shewana3_0162at 186.270 kb on - strandat 186.406 kb on + strandat 186.552 kb on - strand, within Shewana3_0163at 186.563 kb on + strand, within Shewana3_0163

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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183,805 + Shewana3_0159 0.57 +1.8
183,893 + Shewana3_0159 0.65 +0.8
183,893 + Shewana3_0159 0.65 +0.6
183,893 + Shewana3_0159 0.65 +1.2
183,893 + Shewana3_0159 0.65 +1.4
183,901 - Shewana3_0159 0.65 +1.8
183,921 - Shewana3_0159 0.67 -0.2
183,964 + Shewana3_0159 0.71 -0.8
184,020 - Shewana3_0159 0.75 +2.2
184,049 + Shewana3_0159 0.78 -0.1
184,057 - Shewana3_0159 0.78 -1.0
184,057 - Shewana3_0159 0.78 +1.9
184,107 + Shewana3_0159 0.83 +0.6
184,107 + Shewana3_0159 0.83 +0.4
184,115 - Shewana3_0159 0.83 -0.2
184,115 - Shewana3_0159 0.83 +0.6
184,467 - Shewana3_0160 0.32 -1.1
184,472 + Shewana3_0160 0.33 +1.1
184,472 + Shewana3_0160 0.33 +1.6
184,558 + Shewana3_0160 0.51 +0.6
184,558 + Shewana3_0160 0.51 +2.9
184,558 + Shewana3_0160 0.51 +0.4
184,558 + Shewana3_0160 0.51 +0.4
184,558 + Shewana3_0160 0.51 +0.6
184,566 - Shewana3_0160 0.53 +0.2
184,576 + Shewana3_0160 0.55 +0.1
184,627 - Shewana3_0160 0.66 +1.6
184,723 + Shewana3_0160 0.86 +0.2
184,947 - Shewana3_0161 0.19 +0.4
185,077 - Shewana3_0161 0.36 -1.4
185,108 + Shewana3_0161 0.40 +1.4
185,146 + Shewana3_0161 0.45 +0.4
185,174 - Shewana3_0161 0.48 +1.1
185,375 - Shewana3_0161 0.75 +1.2
185,490 - +0.9
185,529 + -0.5
185,890 + Shewana3_0162 0.39 -0.2
185,923 + Shewana3_0162 0.44 +0.4
185,937 + Shewana3_0162 0.46 +0.9
185,937 + Shewana3_0162 0.46 +0.9
185,945 - Shewana3_0162 0.48 -0.4
186,049 - Shewana3_0162 0.63 -0.5
186,122 - Shewana3_0162 0.74 +0.8
186,171 - Shewana3_0162 0.82 +0.2
186,171 - Shewana3_0162 0.82 -0.0
186,270 - +0.2
186,406 + +1.4
186,552 - Shewana3_0163 0.25 -0.4
186,563 + Shewana3_0163 0.27 -1.0

Or see this region's nucleotide sequence