Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4318

Experiment: Cytidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4317 and Shewana3_4318 are separated by 113 nucleotidesShewana3_4318 and Shewana3_4319 are separated by 2 nucleotidesShewana3_4319 and Shewana3_4320 are separated by 125 nucleotides Shewana3_4317: Shewana3_4317 - chromosome segregation ATPases-like protein (RefSeq), at 205,173 to 206,222 _4317 Shewana3_4318: Shewana3_4318 - transposase Tn3 family protein (RefSeq), at 206,336 to 209,230 _4318 Shewana3_4319: Shewana3_4319 - resolvase domain-containing protein (RefSeq), at 209,233 to 209,793 _4319 Shewana3_4320: Shewana3_4320 - signal peptidase II (RefSeq), at 209,919 to 210,998 _4320 Position (kb) 206 207 208 209 210Strain fitness (log2 ratio) -2 -1 0 1at 205.379 kb on + strand, within Shewana3_4317at 205.521 kb on + strand, within Shewana3_4317at 205.521 kb on - strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.569 kb on + strand, within Shewana3_4317at 205.709 kb on + strand, within Shewana3_4317at 205.828 kb on - strand, within Shewana3_4317at 205.831 kb on + strand, within Shewana3_4317at 205.848 kb on - strand, within Shewana3_4317at 205.906 kb on - strand, within Shewana3_4317at 205.916 kb on - strand, within Shewana3_4317at 205.952 kb on + strand, within Shewana3_4317at 206.032 kb on - strand, within Shewana3_4317at 206.134 kb on - strandat 206.404 kb on + strandat 206.562 kb on - strandat 206.562 kb on - strandat 206.631 kb on + strand, within Shewana3_4318at 206.636 kb on + strand, within Shewana3_4318at 206.644 kb on - strand, within Shewana3_4318at 206.658 kb on + strand, within Shewana3_4318at 206.659 kb on - strand, within Shewana3_4318at 206.707 kb on - strand, within Shewana3_4318at 206.954 kb on - strand, within Shewana3_4318at 207.013 kb on - strand, within Shewana3_4318at 207.048 kb on + strand, within Shewana3_4318at 207.160 kb on + strand, within Shewana3_4318at 207.238 kb on + strand, within Shewana3_4318at 207.306 kb on - strand, within Shewana3_4318at 207.353 kb on - strand, within Shewana3_4318at 207.353 kb on - strand, within Shewana3_4318at 207.411 kb on + strand, within Shewana3_4318at 207.419 kb on - strand, within Shewana3_4318at 207.436 kb on + strand, within Shewana3_4318at 207.444 kb on - strand, within Shewana3_4318at 207.737 kb on - strand, within Shewana3_4318at 207.795 kb on + strand, within Shewana3_4318at 207.832 kb on + strand, within Shewana3_4318at 207.870 kb on - strand, within Shewana3_4318at 207.876 kb on + strand, within Shewana3_4318at 207.928 kb on + strand, within Shewana3_4318at 208.219 kb on + strand, within Shewana3_4318at 208.466 kb on + strand, within Shewana3_4318at 208.471 kb on + strand, within Shewana3_4318at 208.479 kb on - strand, within Shewana3_4318at 208.507 kb on + strand, within Shewana3_4318at 208.542 kb on + strand, within Shewana3_4318at 208.608 kb on + strand, within Shewana3_4318at 208.608 kb on + strand, within Shewana3_4318at 208.616 kb on - strand, within Shewana3_4318at 208.803 kb on + strand, within Shewana3_4318at 208.977 kb on + strandat 208.985 kb on - strandat 209.038 kb on + strandat 209.163 kb on + strandat 209.381 kb on + strand, within Shewana3_4319at 209.472 kb on + strand, within Shewana3_4319at 209.608 kb on + strand, within Shewana3_4319at 209.723 kb on - strand, within Shewana3_4319at 209.764 kb on - strandat 209.767 kb on + strandat 209.898 kb on + strandat 209.905 kb on + strandat 209.918 kb on - strandat 209.925 kb on - strandat 210.099 kb on + strand, within Shewana3_4320at 210.177 kb on - strand, within Shewana3_4320at 210.190 kb on + strand, within Shewana3_4320

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (C)
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205,379 + Shewana3_4317 0.20 +0.9
205,521 + Shewana3_4317 0.33 +1.2
205,521 - Shewana3_4317 0.33 +0.4
205,569 + Shewana3_4317 0.38 -0.0
205,569 + Shewana3_4317 0.38 +0.9
205,709 + Shewana3_4317 0.51 -2.1
205,828 - Shewana3_4317 0.62 +0.5
205,831 + Shewana3_4317 0.63 +0.5
205,848 - Shewana3_4317 0.64 +0.6
205,906 - Shewana3_4317 0.70 -1.1
205,916 - Shewana3_4317 0.71 +0.2
205,952 + Shewana3_4317 0.74 -2.4
206,032 - Shewana3_4317 0.82 +0.4
206,134 - +0.2
206,404 + +0.7
206,562 - -0.2
206,562 - +0.8
206,631 + Shewana3_4318 0.10 -0.5
206,636 + Shewana3_4318 0.10 +0.5
206,644 - Shewana3_4318 0.11 -0.2
206,658 + Shewana3_4318 0.11 +0.3
206,659 - Shewana3_4318 0.11 -0.2
206,707 - Shewana3_4318 0.13 +0.8
206,954 - Shewana3_4318 0.21 +0.4
207,013 - Shewana3_4318 0.23 +0.2
207,048 + Shewana3_4318 0.25 +0.3
207,160 + Shewana3_4318 0.28 -0.8
207,238 + Shewana3_4318 0.31 -0.3
207,306 - Shewana3_4318 0.34 -2.1
207,353 - Shewana3_4318 0.35 -0.5
207,353 - Shewana3_4318 0.35 +0.6
207,411 + Shewana3_4318 0.37 -2.5
207,419 - Shewana3_4318 0.37 -0.4
207,436 + Shewana3_4318 0.38 -0.2
207,444 - Shewana3_4318 0.38 -0.6
207,737 - Shewana3_4318 0.48 +0.4
207,795 + Shewana3_4318 0.50 -0.6
207,832 + Shewana3_4318 0.52 -0.5
207,870 - Shewana3_4318 0.53 +0.8
207,876 + Shewana3_4318 0.53 +0.7
207,928 + Shewana3_4318 0.55 +0.2
208,219 + Shewana3_4318 0.65 +0.2
208,466 + Shewana3_4318 0.74 +0.6
208,471 + Shewana3_4318 0.74 +0.8
208,479 - Shewana3_4318 0.74 -0.0
208,507 + Shewana3_4318 0.75 +0.2
208,542 + Shewana3_4318 0.76 -0.1
208,608 + Shewana3_4318 0.78 +0.1
208,608 + Shewana3_4318 0.78 +0.5
208,616 - Shewana3_4318 0.79 -0.0
208,803 + Shewana3_4318 0.85 +0.1
208,977 + -0.0
208,985 - -0.5
209,038 + +0.1
209,163 + +0.3
209,381 + Shewana3_4319 0.26 +0.5
209,472 + Shewana3_4319 0.43 +0.7
209,608 + Shewana3_4319 0.67 -0.4
209,723 - Shewana3_4319 0.87 +0.6
209,764 - -0.1
209,767 + -0.0
209,898 + +0.3
209,905 + -0.4
209,918 - +0.4
209,925 - +0.2
210,099 + Shewana3_4320 0.17 +1.3
210,177 - Shewana3_4320 0.24 +0.5
210,190 + Shewana3_4320 0.25 +0.8

Or see this region's nucleotide sequence