Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4209 and Shewana3_4210 are separated by 74 nucleotides Shewana3_4210 and Shewana3_4211 are separated by 141 nucleotides Shewana3_4211 and Shewana3_4212 overlap by 4 nucleotides Shewana3_4212 and Shewana3_4213 are separated by 135 nucleotides
Shewana3_4209: Shewana3_4209 - Type IV secretory pathway protease TraF-like protein (RefSeq), at 78,004 to 78,510
_4209
Shewana3_4210: Shewana3_4210 - hypothetical protein (RefSeq), at 78,585 to 79,010
_4210
Shewana3_4211: Shewana3_4211 - hypothetical protein (RefSeq), at 79,152 to 79,604
_4211
Shewana3_4212: Shewana3_4212 - hypothetical protein (RefSeq), at 79,601 to 80,062
_4212
Shewana3_4213: Shewana3_4213 - hypothetical protein (RefSeq), at 80,198 to 84,442
_4213
Position (kb) 79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 78.210 kb on + strand, within Shewana3_4209 at 78.210 kb on + strand, within Shewana3_4209 at 78.218 kb on - strand, within Shewana3_4209 at 78.316 kb on - strand, within Shewana3_4209 at 78.491 kb on + strand at 78.774 kb on + strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 78.900 kb on - strand, within Shewana3_4210 at 79.020 kb on - strand at 79.055 kb on - strand at 79.282 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.499 kb on - strand, within Shewana3_4211 at 79.612 kb on - strand at 79.614 kb on - strand at 80.251 kb on - strand at 80.379 kb on - strand at 80.381 kb on + strand at 80.476 kb on + strand at 80.519 kb on + strand at 80.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 78,210 + Shewana3_4209 0.41 +0.2 78,210 + Shewana3_4209 0.41 +0.2 78,218 - Shewana3_4209 0.42 +1.3 78,316 - Shewana3_4209 0.62 +0.0 78,491 + -0.6 78,774 + Shewana3_4210 0.44 +0.7 78,900 - Shewana3_4210 0.74 -0.3 78,900 - Shewana3_4210 0.74 +0.0 79,020 - -0.1 79,055 - +0.2 79,282 - Shewana3_4211 0.29 +0.8 79,499 - Shewana3_4211 0.77 +0.9 79,499 - Shewana3_4211 0.77 -2.0 79,499 - Shewana3_4211 0.77 +0.8 79,612 - -1.7 79,614 - -0.1 80,251 - +0.0 80,379 - +0.1 80,381 + +0.3 80,476 + +0.2 80,519 + +0.8 80,527 - +0.5
Or see this region's nucleotide sequence