Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4184 and Shewana3_4185 are separated by 152 nucleotides Shewana3_4185 and Shewana3_4186 are separated by 2 nucleotides Shewana3_4186 and Shewana3_4187 are separated by 104 nucleotides
Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745
_4184
Shewana3_4185: Shewana3_4185 - hypothetical protein (RefSeq), at 50,898 to 51,413
_4185
Shewana3_4186: Shewana3_4186 - membrane-bound metal-dependent hydrolase (RefSeq), at 51,416 to 51,769
_4186
Shewana3_4187: Shewana3_4187 - hypothetical protein (RefSeq), at 51,874 to 52,488
_4187
Position (kb) 51
52 Strain fitness (log2 ratio) -1
0
1 at 50.708 kb on - strand at 50.966 kb on + strand, within Shewana3_4185 at 51.181 kb on + strand, within Shewana3_4185 at 51.286 kb on - strand, within Shewana3_4185 at 51.406 kb on - strand at 51.489 kb on + strand, within Shewana3_4186 at 51.545 kb on - strand, within Shewana3_4186 at 51.633 kb on + strand, within Shewana3_4186 at 51.855 kb on - strand at 52.172 kb on - strand, within Shewana3_4187 at 52.304 kb on - strand, within Shewana3_4187 at 52.306 kb on + strand, within Shewana3_4187 at 52.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 50,708 - +0.3 50,966 + Shewana3_4185 0.13 +0.2 51,181 + Shewana3_4185 0.55 +0.4 51,286 - Shewana3_4185 0.75 -0.3 51,406 - +0.1 51,489 + Shewana3_4186 0.21 +0.2 51,545 - Shewana3_4186 0.36 +1.2 51,633 + Shewana3_4186 0.61 +0.8 51,855 - -0.2 52,172 - Shewana3_4187 0.48 -0.5 52,304 - Shewana3_4187 0.70 -0.4 52,306 + Shewana3_4187 0.70 +0.0 52,529 + -0.4
Or see this region's nucleotide sequence