Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3546 and Shew_3547 are separated by 24 nucleotides Shew_3547 and Shew_3548 are separated by 300 nucleotides Shew_3548 and Shew_3549 are separated by 222 nucleotides
Shew_3546: Shew_3546 - hypothetical protein (RefSeq), at 4,233,641 to 4,233,862
_3546
Shew_3547: Shew_3547 - hypothetical protein (RefSeq), at 4,233,887 to 4,234,537
_3547
Shew_3548: Shew_3548 - hypothetical protein (RefSeq), at 4,234,838 to 4,235,455
_3548
Shew_3549: Shew_3549 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 4,235,678 to 4,236,892
_3549
Position (kb) 4234
4235
4236 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4233.847 kb on + strand at 4234.610 kb on + strand at 4234.618 kb on - strand at 4234.663 kb on - strand at 4234.808 kb on + strand at 4235.140 kb on + strand, within Shew_3548 at 4235.306 kb on - strand, within Shew_3548 at 4235.387 kb on - strand, within Shew_3548 at 4235.706 kb on - strand at 4235.708 kb on - strand at 4236.021 kb on + strand, within Shew_3549 at 4236.345 kb on + strand, within Shew_3549
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 4,233,847 + +0.1 4,234,610 + +1.0 4,234,618 - -0.0 4,234,663 - +1.5 4,234,808 + +0.2 4,235,140 + Shew_3548 0.49 -0.0 4,235,306 - Shew_3548 0.76 -0.4 4,235,387 - Shew_3548 0.89 -5.7 4,235,706 - -0.1 4,235,708 - -0.2 4,236,021 + Shew_3549 0.28 +0.9 4,236,345 + Shew_3549 0.55 +0.7
Or see this region's nucleotide sequence