Strain Fitness in Shewanella loihica PV-4 around Shew_1939

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1937 and Shew_1938 are separated by 9 nucleotidesShew_1938 and Shew_1939 overlap by 4 nucleotidesShew_1939 and ansA are separated by 59 nucleotides Shew_1937: Shew_1937 - peptidase M14, carboxypeptidase A (RefSeq), at 2,237,876 to 2,239,003 _1937 Shew_1938: Shew_1938 - hypothetical protein (RefSeq), at 2,239,013 to 2,239,330 _1938 Shew_1939: Shew_1939 - hypothetical protein (RefSeq), at 2,239,327 to 2,239,608 _1939 Shew_1940: ansA - cytoplasmic asparaginase I (RefSeq), at 2,239,668 to 2,240,681 ansA Position (kb) 2239 2240Strain fitness (log2 ratio) -1 0 1at 2238.357 kb on - strand, within Shew_1937at 2238.804 kb on + strand, within Shew_1937at 2239.547 kb on - strand, within Shew_1939at 2239.726 kb on + strandat 2240.566 kb on + strand, within ansA

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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2,238,357 - Shew_1937 0.43 -0.1
2,238,804 + Shew_1937 0.82 +0.1
2,239,547 - Shew_1939 0.78 -0.2
2,239,726 + -0.2
2,240,566 + ansA Shew_1940 0.89 -0.9

Or see this region's nucleotide sequence