Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1197 and Shew_1198 are separated by 97 nucleotides Shew_1198 and Shew_1199 are separated by 3 nucleotides Shew_1199 and Shew_1200 overlap by 8 nucleotides
Shew_1197: Shew_1197 - auxin efflux carrier (RefSeq), at 1,389,101 to 1,390,069
_1197
Shew_1198: Shew_1198 - hypothetical protein (RefSeq), at 1,390,167 to 1,390,361
_1198
Shew_1199: Shew_1199 - hypothetical protein (RefSeq), at 1,390,365 to 1,390,967
_1199
Shew_1200: Shew_1200 - hybrid sensory histidine kinase BarA (RefSeq), at 1,390,960 to 1,393,761
_1200
Position (kb) 1390
1391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1389.420 kb on + strand, within Shew_1197 at 1389.425 kb on + strand, within Shew_1197 at 1389.514 kb on - strand, within Shew_1197 at 1389.623 kb on - strand, within Shew_1197 at 1389.828 kb on + strand, within Shew_1197 at 1390.127 kb on + strand at 1390.648 kb on + strand, within Shew_1199 at 1390.670 kb on - strand, within Shew_1199 at 1390.979 kb on + strand at 1391.031 kb on + strand at 1391.937 kb on + strand, within Shew_1200 at 1391.937 kb on + strand, within Shew_1200
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 1,389,420 + Shew_1197 0.33 +1.0 1,389,425 + Shew_1197 0.33 +0.6 1,389,514 - Shew_1197 0.43 +0.8 1,389,623 - Shew_1197 0.54 +1.1 1,389,828 + Shew_1197 0.75 +0.6 1,390,127 + +1.9 1,390,648 + Shew_1199 0.47 -0.7 1,390,670 - Shew_1199 0.51 -1.9 1,390,979 + -1.4 1,391,031 + -0.4 1,391,937 + Shew_1200 0.35 +1.5 1,391,937 + Shew_1200 0.35 +2.5
Or see this region's nucleotide sequence