Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0343 and Shew_0344 are separated by 417 nucleotides Shew_0344 and Shew_0345 are separated by 125 nucleotides Shew_0345 and Shew_0346 overlap by 4 nucleotides
Shew_0343: Shew_0343 - hypothetical protein (RefSeq), at 390,657 to 391,235
_0343
Shew_0344: Shew_0344 - Na+/H+ antiporter NhaC (RefSeq), at 391,653 to 393,173
_0344
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Position (kb) 391
392
393
394 Strain fitness (log2 ratio) -1
0
1 at 390.711 kb on - strand at 391.047 kb on - strand, within Shew_0343 at 391.066 kb on + strand, within Shew_0343 at 392.110 kb on - strand, within Shew_0344 at 392.238 kb on - strand, within Shew_0344 at 392.247 kb on - strand, within Shew_0344 at 392.303 kb on + strand, within Shew_0344 at 392.318 kb on - strand, within Shew_0344 at 392.543 kb on + strand, within Shew_0344 at 392.713 kb on - strand, within Shew_0344 at 392.747 kb on - strand, within Shew_0344 at 392.957 kb on - strand, within Shew_0344 at 393.073 kb on + strand at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 390,711 - +0.2 391,047 - Shew_0343 0.67 +1.7 391,066 + Shew_0343 0.71 -0.1 392,110 - Shew_0344 0.30 -0.0 392,238 - Shew_0344 0.38 +0.2 392,247 - Shew_0344 0.39 -0.3 392,303 + Shew_0344 0.43 -0.4 392,318 - Shew_0344 0.44 -0.0 392,543 + Shew_0344 0.59 +0.2 392,713 - Shew_0344 0.70 +0.5 392,747 - Shew_0344 0.72 -0.6 392,957 - Shew_0344 0.86 -0.2 393,073 + -0.0 393,453 - Shew_0345 0.24 +0.1 393,486 + Shew_0345 0.29 +0.8 393,789 + Shew_0345 0.77 +0.5 393,896 - +0.4 394,129 - Shew_0346 0.44 -0.0
Or see this region's nucleotide sequence