Experiment: Light Dark second sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rps7 and rps12 are separated by 167 nucleotides rps12 and Synpcc7942_0888 are separated by 155 nucleotides Synpcc7942_0888 and Synpcc7942_0889 overlap by 4 nucleotides
Synpcc7942_0886: rps7 - 30S ribosomal protein S7, at 893,112 to 893,582
rps7
Synpcc7942_0887: rps12 - 30S ribosomal protein S12, at 893,750 to 894,124
rps12
Synpcc7942_0888: Synpcc7942_0888 - mannose-1-phosphate guanylyltransferase-like, at 894,280 to 894,639
_0888
Synpcc7942_0889: Synpcc7942_0889 - hypothetical protein, at 894,636 to 896,453
_0889
Position (kb) 894
895 Strain fitness (log2 ratio) -2
-1
0
1 at 894.207 kb on + strand at 894.208 kb on - strand at 894.268 kb on - strand at 894.281 kb on - strand at 894.285 kb on + strand at 894.295 kb on - strand at 894.326 kb on - strand, within Synpcc7942_0888 at 894.331 kb on - strand, within Synpcc7942_0888 at 894.375 kb on - strand, within Synpcc7942_0888 at 894.440 kb on - strand, within Synpcc7942_0888 at 894.440 kb on - strand, within Synpcc7942_0888 at 894.482 kb on - strand, within Synpcc7942_0888 at 894.502 kb on - strand, within Synpcc7942_0888 at 894.509 kb on - strand, within Synpcc7942_0888 at 894.540 kb on + strand, within Synpcc7942_0888 at 894.544 kb on + strand, within Synpcc7942_0888 at 894.554 kb on + strand, within Synpcc7942_0888 at 894.581 kb on - strand, within Synpcc7942_0888 at 894.603 kb on + strand, within Synpcc7942_0888 at 894.603 kb on + strand, within Synpcc7942_0888 at 894.603 kb on + strand, within Synpcc7942_0888 at 894.611 kb on - strand at 894.611 kb on - strand at 894.611 kb on - strand at 894.611 kb on - strand at 894.611 kb on - strand at 894.613 kb on - strand at 894.613 kb on - strand at 894.634 kb on - strand at 894.648 kb on + strand at 894.661 kb on - strand at 894.662 kb on + strand at 894.670 kb on - strand at 895.550 kb on - strand, within Synpcc7942_0889
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark second sampling rep2 remove 894,207 + +1.3 894,208 - -0.5 894,268 - +0.5 894,281 - +1.0 894,285 + +0.3 894,295 - -0.6 894,326 - Synpcc7942_0888 0.13 -0.0 894,331 - Synpcc7942_0888 0.14 -0.5 894,375 - Synpcc7942_0888 0.26 +0.0 894,440 - Synpcc7942_0888 0.44 -0.2 894,440 - Synpcc7942_0888 0.44 -0.4 894,482 - Synpcc7942_0888 0.56 -0.5 894,502 - Synpcc7942_0888 0.62 -0.4 894,509 - Synpcc7942_0888 0.64 +0.1 894,540 + Synpcc7942_0888 0.72 +0.3 894,544 + Synpcc7942_0888 0.73 +0.1 894,554 + Synpcc7942_0888 0.76 +0.2 894,581 - Synpcc7942_0888 0.84 -0.6 894,603 + Synpcc7942_0888 0.90 -0.5 894,603 + Synpcc7942_0888 0.90 -0.5 894,603 + Synpcc7942_0888 0.90 -0.9 894,611 - +0.1 894,611 - -0.9 894,611 - +0.6 894,611 - -0.4 894,611 - +0.0 894,613 - +0.2 894,613 - +0.3 894,634 - +0.9 894,648 + -0.4 894,661 - +0.9 894,662 + -0.5 894,670 - +0.4 895,550 - Synpcc7942_0889 0.50 -2.3
Or see this region's nucleotide sequence