Experiment: Light Dark second sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clpB and gloA are separated by 87 nucleotides gloA and eno are separated by 213 nucleotides eno and Synpcc7942_0640 are separated by 255 nucleotides
Synpcc7942_0637: clpB - ATPase, at 627,275 to 629,962
clpB
Synpcc7942_0638: gloA - Glyoxalase I, at 630,050 to 630,463
gloA
Synpcc7942_0639: eno - phosphopyruvate hydratase, at 630,677 to 631,969
eno
Synpcc7942_0640: Synpcc7942_0640 - ATPase, at 632,225 to 633,991
_0640
Position (kb) 630
631
632 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 629.968 kb on + strand at 629.968 kb on + strand at 629.968 kb on - strand at 629.976 kb on - strand at 630.019 kb on - strand at 630.021 kb on + strand at 630.026 kb on + strand at 630.041 kb on + strand at 630.041 kb on + strand at 630.049 kb on - strand at 630.073 kb on + strand at 630.081 kb on - strand at 630.091 kb on + strand at 630.154 kb on - strand, within gloA at 630.221 kb on - strand, within gloA at 630.221 kb on - strand, within gloA at 630.223 kb on + strand, within gloA at 630.238 kb on + strand, within gloA at 630.245 kb on + strand, within gloA at 630.257 kb on + strand, within gloA at 630.266 kb on + strand, within gloA at 630.284 kb on + strand at 630.287 kb on - strand, within gloA at 630.291 kb on - strand, within gloA at 630.291 kb on - strand, within gloA at 630.296 kb on + strand, within gloA at 630.303 kb on - strand, within gloA at 630.304 kb on + strand, within gloA at 630.305 kb on + strand, within gloA at 630.310 kb on + strand, within gloA at 630.333 kb on + strand, within gloA at 630.333 kb on + strand, within gloA at 630.333 kb on + strand, within gloA at 630.341 kb on - strand, within gloA at 630.351 kb on - strand, within gloA at 630.351 kb on - strand, within gloA at 630.357 kb on + strand, within gloA at 630.368 kb on - strand, within gloA at 630.397 kb on - strand, within gloA at 630.398 kb on - strand, within gloA at 630.402 kb on + strand, within gloA at 630.418 kb on - strand, within gloA at 630.449 kb on + strand at 630.452 kb on - strand at 630.503 kb on + strand at 630.511 kb on - strand at 630.518 kb on - strand at 630.539 kb on + strand at 630.541 kb on + strand at 630.549 kb on - strand at 630.549 kb on - strand at 630.591 kb on - strand at 630.666 kb on - strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.932 kb on + strand at 631.940 kb on - strand at 631.947 kb on + strand at 631.947 kb on + strand at 631.955 kb on - strand at 631.970 kb on + strand at 631.970 kb on + strand at 632.024 kb on + strand at 632.030 kb on - strand at 632.036 kb on - strand at 632.066 kb on - strand at 632.096 kb on - strand at 632.162 kb on + strand at 632.203 kb on - strand at 632.275 kb on - strand at 632.353 kb on - strand at 632.358 kb on - strand at 632.390 kb on + strand at 632.398 kb on - strand at 632.440 kb on + strand, within Synpcc7942_0640 at 632.493 kb on - strand, within Synpcc7942_0640 at 632.552 kb on + strand, within Synpcc7942_0640 at 632.609 kb on + strand, within Synpcc7942_0640 at 632.692 kb on - strand, within Synpcc7942_0640 at 632.716 kb on + strand, within Synpcc7942_0640 at 632.770 kb on + strand, within Synpcc7942_0640 at 632.795 kb on - strand, within Synpcc7942_0640 at 632.911 kb on - strand, within Synpcc7942_0640 at 632.948 kb on - strand, within Synpcc7942_0640
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark second sampling rep2 remove 629,968 + -0.6 629,968 + +0.2 629,968 - -0.7 629,976 - -4.7 630,019 - +0.3 630,021 + +0.3 630,026 + +0.7 630,041 + -1.0 630,041 + +0.0 630,049 - -1.1 630,073 + +0.1 630,081 - -1.0 630,091 + +0.0 630,154 - gloA Synpcc7942_0638 0.25 +0.3 630,221 - gloA Synpcc7942_0638 0.41 +1.4 630,221 - gloA Synpcc7942_0638 0.41 +0.1 630,223 + gloA Synpcc7942_0638 0.42 -2.7 630,238 + gloA Synpcc7942_0638 0.45 -3.0 630,245 + gloA Synpcc7942_0638 0.47 +0.4 630,257 + gloA Synpcc7942_0638 0.50 -0.9 630,266 + gloA Synpcc7942_0638 0.52 +0.4 630,284 + -1.1 630,287 - gloA Synpcc7942_0638 0.57 -0.6 630,291 - gloA Synpcc7942_0638 0.58 +0.6 630,291 - gloA Synpcc7942_0638 0.58 -0.4 630,296 + gloA Synpcc7942_0638 0.59 -0.7 630,303 - gloA Synpcc7942_0638 0.61 +0.6 630,304 + gloA Synpcc7942_0638 0.61 +0.7 630,305 + gloA Synpcc7942_0638 0.62 +0.7 630,310 + gloA Synpcc7942_0638 0.63 +0.3 630,333 + gloA Synpcc7942_0638 0.68 -0.4 630,333 + gloA Synpcc7942_0638 0.68 +0.3 630,333 + gloA Synpcc7942_0638 0.68 +0.3 630,341 - gloA Synpcc7942_0638 0.70 -0.3 630,351 - gloA Synpcc7942_0638 0.73 +0.8 630,351 - gloA Synpcc7942_0638 0.73 +0.1 630,357 + gloA Synpcc7942_0638 0.74 -1.0 630,368 - gloA Synpcc7942_0638 0.77 +0.2 630,397 - gloA Synpcc7942_0638 0.84 -2.2 630,398 - gloA Synpcc7942_0638 0.84 -0.0 630,402 + gloA Synpcc7942_0638 0.85 -2.3 630,418 - gloA Synpcc7942_0638 0.89 +0.0 630,449 + +0.1 630,452 - +0.0 630,503 + +0.2 630,511 - -0.1 630,518 - +0.1 630,539 + +0.4 630,541 + +0.3 630,549 - -0.4 630,549 - +1.0 630,591 - +0.5 630,666 - -2.3 631,932 + +1.2 631,932 + +0.7 631,932 + +1.7 631,932 + +0.1 631,932 + +0.4 631,940 - +1.6 631,947 + +0.3 631,947 + +0.7 631,955 - +0.6 631,970 + +0.5 631,970 + +1.7 632,024 + -0.2 632,030 - -0.2 632,036 - -0.2 632,066 - -4.2 632,096 - +0.4 632,162 + +0.3 632,203 - +0.8 632,275 - +0.4 632,353 - +0.8 632,358 - +0.4 632,390 + +0.1 632,398 - -0.9 632,440 + Synpcc7942_0640 0.12 +0.5 632,493 - Synpcc7942_0640 0.15 +0.6 632,552 + Synpcc7942_0640 0.19 -0.9 632,609 + Synpcc7942_0640 0.22 +0.4 632,692 - Synpcc7942_0640 0.26 +0.4 632,716 + Synpcc7942_0640 0.28 +0.7 632,770 + Synpcc7942_0640 0.31 -0.3 632,795 - Synpcc7942_0640 0.32 -0.2 632,911 - Synpcc7942_0640 0.39 +0.3 632,948 - Synpcc7942_0640 0.41 -0.7
Or see this region's nucleotide sequence