Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06875 and RS_RS06880 are separated by 79 nucleotides RS_RS06880 and RS_RS06885 are separated by 93 nucleotides RS_RS06885 and RS_RS06890 are separated by 9 nucleotides
RS_RS06875: RS_RS06875 - alanine racemase, at 1,460,580 to 1,461,707
_RS06875
RS_RS06880: RS_RS06880 - DNA repair protein RadA, at 1,461,787 to 1,463,157
_RS06880
RS_RS06885: RS_RS06885 - disulfide bond formation protein B, at 1,463,251 to 1,463,730
_RS06885
RS_RS06890: RS_RS06890 - DUF523 domain-containing protein, at 1,463,740 to 1,464,261
_RS06890
Position (kb) 1461
1462
1463
1464 Strain fitness (log2 ratio) -1
0
1 at 1461.216 kb on + strand at 1461.810 kb on + strand at 1461.810 kb on + strand at 1461.810 kb on + strand at 1461.811 kb on - strand at 1462.483 kb on - strand, within RS_RS06880 at 1463.324 kb on - strand, within RS_RS06885 at 1464.103 kb on + strand, within RS_RS06890
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,461,216 + +1.7 1,461,810 + -0.6 1,461,810 + +0.2 1,461,810 + -0.3 1,461,811 - -0.7 1,462,483 - RS_RS06880 0.51 +0.2 1,463,324 - RS_RS06885 0.15 -0.6 1,464,103 + RS_RS06890 0.70 +0.0
Or see this region's nucleotide sequence