Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04725 and RS_RS04730 are separated by 79 nucleotides RS_RS04730 and RS_RS04735 are separated by 68 nucleotides
RS_RS04725: RS_RS04725 - L-histidine N(alpha)-methyltransferase, at 998,055 to 999,101
_RS04725
RS_RS04730: RS_RS04730 - ergothioneine biosynthesis protein EgtB, at 999,181 to 1,000,479
_RS04730
RS_RS04735: RS_RS04735 - RNA helicase, at 1,000,548 to 1,002,374
_RS04735
Position (kb) 999
1000
1001 Strain fitness (log2 ratio) -2
-1
0
1 at 998.288 kb on + strand, within RS_RS04725 at 998.304 kb on + strand, within RS_RS04725 at 998.305 kb on - strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.454 kb on + strand, within RS_RS04725 at 998.455 kb on - strand, within RS_RS04725 at 998.455 kb on - strand, within RS_RS04725 at 998.610 kb on + strand, within RS_RS04725 at 998.611 kb on - strand, within RS_RS04725 at 998.630 kb on + strand, within RS_RS04725 at 998.631 kb on - strand, within RS_RS04725 at 998.751 kb on + strand, within RS_RS04725 at 999.331 kb on - strand, within RS_RS04730 at 999.614 kb on - strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.904 kb on + strand, within RS_RS04730 at 999.905 kb on - strand, within RS_RS04730 at 999.905 kb on - strand, within RS_RS04730 at 999.952 kb on + strand, within RS_RS04730 at 1000.151 kb on - strand, within RS_RS04730 at 1000.386 kb on + strand at 1000.387 kb on - strand at 1000.585 kb on + strand at 1000.610 kb on - strand at 1000.610 kb on - strand at 1000.700 kb on + strand at 1000.701 kb on - strand at 1000.807 kb on + strand, within RS_RS04735 at 1001.038 kb on + strand, within RS_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 998,288 + RS_RS04725 0.22 -0.1 998,304 + RS_RS04725 0.24 +0.1 998,305 - RS_RS04725 0.24 +0.6 998,454 + RS_RS04725 0.38 -0.5 998,454 + RS_RS04725 0.38 -0.0 998,454 + RS_RS04725 0.38 +0.5 998,454 + RS_RS04725 0.38 +0.2 998,454 + RS_RS04725 0.38 +0.1 998,455 - RS_RS04725 0.38 -0.6 998,455 - RS_RS04725 0.38 +0.3 998,610 + RS_RS04725 0.53 +0.6 998,611 - RS_RS04725 0.53 -0.2 998,630 + RS_RS04725 0.55 -0.2 998,631 - RS_RS04725 0.55 -0.0 998,751 + RS_RS04725 0.66 -0.8 999,331 - RS_RS04730 0.12 -2.7 999,614 - RS_RS04730 0.33 -0.5 999,904 + RS_RS04730 0.56 -0.3 999,904 + RS_RS04730 0.56 -1.7 999,904 + RS_RS04730 0.56 +0.6 999,905 - RS_RS04730 0.56 +0.3 999,905 - RS_RS04730 0.56 -0.0 999,952 + RS_RS04730 0.59 -0.1 1,000,151 - RS_RS04730 0.75 -0.5 1,000,386 + -0.1 1,000,387 - -0.2 1,000,585 + -0.4 1,000,610 - +1.7 1,000,610 - +0.5 1,000,700 + +0.2 1,000,701 - +0.4 1,000,807 + RS_RS04735 0.14 +0.2 1,001,038 + RS_RS04735 0.27 +1.1
Or see this region's nucleotide sequence