Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00130

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00120 and RS_RS00125 are separated by 165 nucleotidesRS_RS00125 and RS_RS00130 are separated by 226 nucleotidesRS_RS00130 and RS_RS00135 overlap by 4 nucleotides RS_RS00120: RS_RS00120 - sel1 repeat family protein, at 28,773 to 29,531 _RS00120 RS_RS00125: RS_RS00125 - hypothetical protein, at 29,697 to 30,218 _RS00125 RS_RS00130: RS_RS00130 - methionine biosynthesis protein MetW, at 30,445 to 31,092 _RS00130 RS_RS00135: RS_RS00135 - homoserine O-acetyltransferase, at 31,089 to 32,300 _RS00135 Position (kb) 30 31 32Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 29.744 kb on + strandat 29.811 kb on - strand, within RS_RS00125at 29.869 kb on + strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.870 kb on - strand, within RS_RS00125at 29.966 kb on - strand, within RS_RS00125at 29.981 kb on - strand, within RS_RS00125at 30.137 kb on + strand, within RS_RS00125at 30.219 kb on + strandat 30.219 kb on + strandat 30.220 kb on - strandat 30.265 kb on + strandat 30.266 kb on - strandat 30.275 kb on + strandat 30.275 kb on + strandat 30.375 kb on - strandat 30.378 kb on + strandat 30.379 kb on - strandat 30.396 kb on - strandat 30.611 kb on + strand, within RS_RS00130at 30.620 kb on + strand, within RS_RS00130at 30.620 kb on + strand, within RS_RS00130at 30.620 kb on + strand, within RS_RS00130at 30.621 kb on - strand, within RS_RS00130at 30.681 kb on - strand, within RS_RS00130at 30.790 kb on - strand, within RS_RS00130at 30.903 kb on - strand, within RS_RS00130at 30.932 kb on - strand, within RS_RS00130at 31.120 kb on + strandat 31.121 kb on - strandat 31.124 kb on - strandat 31.201 kb on + strandat 31.202 kb on - strandat 31.297 kb on + strand, within RS_RS00135at 31.297 kb on + strand, within RS_RS00135at 31.297 kb on - strand, within RS_RS00135at 31.298 kb on - strand, within RS_RS00135at 31.298 kb on - strand, within RS_RS00135at 31.298 kb on - strand, within RS_RS00135at 31.342 kb on + strand, within RS_RS00135at 31.342 kb on + strand, within RS_RS00135at 31.364 kb on - strand, within RS_RS00135at 31.364 kb on - strand, within RS_RS00135at 31.364 kb on - strand, within RS_RS00135at 31.390 kb on + strand, within RS_RS00135at 31.390 kb on + strand, within RS_RS00135at 31.391 kb on - strand, within RS_RS00135at 31.391 kb on - strand, within RS_RS00135at 31.391 kb on - strand, within RS_RS00135at 31.408 kb on + strand, within RS_RS00135at 31.408 kb on + strand, within RS_RS00135at 31.442 kb on - strand, within RS_RS00135at 31.442 kb on - strand, within RS_RS00135at 31.537 kb on + strand, within RS_RS00135at 31.538 kb on - strand, within RS_RS00135at 31.538 kb on - strand, within RS_RS00135at 31.538 kb on - strand, within RS_RS00135at 31.600 kb on + strand, within RS_RS00135at 31.600 kb on + strand, within RS_RS00135at 31.600 kb on + strand, within RS_RS00135at 31.601 kb on - strand, within RS_RS00135at 31.601 kb on - strand, within RS_RS00135at 31.604 kb on - strand, within RS_RS00135at 31.604 kb on - strand, within RS_RS00135at 31.729 kb on + strand, within RS_RS00135at 31.730 kb on - strand, within RS_RS00135at 31.730 kb on - strand, within RS_RS00135at 31.780 kb on - strand, within RS_RS00135at 31.873 kb on + strand, within RS_RS00135

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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29,744 + -3.0
29,811 - RS_RS00125 0.22 +0.4
29,869 + RS_RS00125 0.33 +0.6
29,870 - RS_RS00125 0.33 -1.2
29,870 - RS_RS00125 0.33 -0.5
29,870 - RS_RS00125 0.33 -0.2
29,870 - RS_RS00125 0.33 -0.1
29,966 - RS_RS00125 0.52 +0.7
29,981 - RS_RS00125 0.54 -0.3
30,137 + RS_RS00125 0.84 +0.3
30,219 + +0.4
30,219 + -0.1
30,220 - -0.6
30,265 + -1.2
30,266 - -0.1
30,275 + +0.3
30,275 + +0.0
30,375 - -0.1
30,378 + +0.1
30,379 - -1.9
30,396 - +0.5
30,611 + RS_RS00130 0.26 -1.6
30,620 + RS_RS00130 0.27 -0.2
30,620 + RS_RS00130 0.27 -0.4
30,620 + RS_RS00130 0.27 -1.0
30,621 - RS_RS00130 0.27 -2.6
30,681 - RS_RS00130 0.36 -0.4
30,790 - RS_RS00130 0.53 -1.3
30,903 - RS_RS00130 0.71 -1.1
30,932 - RS_RS00130 0.75 -1.6
31,120 + -4.4
31,121 - -4.1
31,124 - -3.1
31,201 + -0.8
31,202 - -4.3
31,297 + RS_RS00135 0.17 -4.4
31,297 + RS_RS00135 0.17 -5.0
31,297 - RS_RS00135 0.17 -4.7
31,298 - RS_RS00135 0.17 -2.2
31,298 - RS_RS00135 0.17 -3.6
31,298 - RS_RS00135 0.17 -4.2
31,342 + RS_RS00135 0.21 -2.4
31,342 + RS_RS00135 0.21 -5.1
31,364 - RS_RS00135 0.23 -3.3
31,364 - RS_RS00135 0.23 -5.4
31,364 - RS_RS00135 0.23 -4.7
31,390 + RS_RS00135 0.25 -5.8
31,390 + RS_RS00135 0.25 -5.1
31,391 - RS_RS00135 0.25 -4.1
31,391 - RS_RS00135 0.25 -4.7
31,391 - RS_RS00135 0.25 -4.7
31,408 + RS_RS00135 0.26 -5.3
31,408 + RS_RS00135 0.26 -5.7
31,442 - RS_RS00135 0.29 -4.7
31,442 - RS_RS00135 0.29 -4.5
31,537 + RS_RS00135 0.37 -3.9
31,538 - RS_RS00135 0.37 -2.1
31,538 - RS_RS00135 0.37 -1.0
31,538 - RS_RS00135 0.37 -4.3
31,600 + RS_RS00135 0.42 -5.0
31,600 + RS_RS00135 0.42 -4.2
31,600 + RS_RS00135 0.42 -4.5
31,601 - RS_RS00135 0.42 -3.7
31,601 - RS_RS00135 0.42 -4.2
31,604 - RS_RS00135 0.42 -3.0
31,604 - RS_RS00135 0.42 -3.7
31,729 + RS_RS00135 0.53 -4.4
31,730 - RS_RS00135 0.53 -4.8
31,730 - RS_RS00135 0.53 -4.1
31,780 - RS_RS00135 0.57 -2.5
31,873 + RS_RS00135 0.65 -3.4

Or see this region's nucleotide sequence